Gene : Glyma.13G178200 G. max Wm82.a2.v1
Defline:  (1 of 2) KOG2162 - Nonsense-mediated mRNA decay protein Genomic Order:  1782
Name:  ? Glyma.13G178200 Secondary Identifier:  ? PAC:30504892
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G178200 0.5kb upstream 0.5kb upstream 6086 true Chr13: 29194609-29200694 Glycine max
Glyma.13G178200 0.5kb upstream 0.5kb upstream 500 false Chr13: 29200195-29200694 Glycine max
Glyma.13G178200 0.5kb downstream 0.5kb downstream 6086 true Chr13: 29194109-29200194 Glycine max
Glyma.13G178200 0.5kb downstream 0.5kb downstream 500 false Chr13: 29194109-29194608 Glycine max
Glyma.13G178200 1.0kb upstream 1.0kb upstream 6586 true Chr13: 29194609-29201194 Glycine max
Glyma.13G178200 1.0kb upstream 1.0kb upstream 1000 false Chr13: 29200195-29201194 Glycine max
Glyma.13G178200 1.0kb downstream 1.0kb downstream 6586 true Chr13: 29193609-29200194 Glycine max
Glyma.13G178200 1.0kb downstream 1.0kb downstream 1000 false Chr13: 29193609-29194608 Glycine max
Glyma.13G178200 2.0kb upstream 2.0kb upstream 7586 true Chr13: 29194609-29202194 Glycine max
Glyma.13G178200 2.0kb upstream 2.0kb upstream 2000 false Chr13: 29200195-29202194 Glycine max
Glyma.13G178200 2.0kb downstream 2.0kb downstream 7586 true Chr13: 29192609-29200194 Glycine max
Glyma.13G178200 2.0kb downstream 2.0kb downstream 2000 false Chr13: 29192609-29194608 Glycine max
Glyma.13G178200 5.0kb upstream 5.0kb upstream 10586 true Chr13: 29194609-29205194 Glycine max
Glyma.13G178200 5.0kb upstream 5.0kb upstream 5000 false Chr13: 29200195-29205194 Glycine max
Glyma.13G178200 5.0kb downstream 5.0kb downstream 10586 true Chr13: 29189609-29200194 Glycine max
Glyma.13G178200 5.0kb downstream 5.0kb downstream 5000 false Chr13: 29189609-29194608 Glycine max
Glyma.13G178200 10.0kb upstream 10.0kb upstream 15586 true Chr13: 29194609-29210194 Glycine max
Glyma.13G178200 10.0kb upstream 10.0kb upstream 10000 false Chr13: 29200195-29210194 Glycine max
Glyma.13G178200 10.0kb downstream 10.0kb downstream 15586 true Chr13: 29184609-29200194 Glycine max
Glyma.13G178200 10.0kb downstream 10.0kb downstream 10000 false Chr13: 29184609-29194608 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300747 5265 Fabidae View MSA
124050275 5270 Rosid View MSA
123740560 5271 Pentapetalae View MSA
122792675 5272 Eudicot View MSA
122043425 5273 Angiosperm View MSA
121310120 5274 Embryophyte View MSA
123426231 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.51984 0.0 20.0956    
cufflinks 2.93785 0.0 15.5655    
cufflinks 4.93906 0.0 23.0331    
cufflinks 4.79587 0.0 28.5422    
cufflinks 2.58225 0.0 10.824   Low
cufflinks 1.86631 0.0 7.25645   Low
cufflinks 4.99153 0.0 25.6853    
cufflinks 5.06142 0.0 24.1537    
cufflinks 4.76419 0.0 20.8188    
cufflinks 0.219        
cufflinks 0.248        
cufflinks 0.356       High
cufflinks 0.038     Low Low
cufflinks 0.056     Low Low
cufflinks 0.311       High
cufflinks 0.156        
cufflinks 0.08       Low
cufflinks 0.274        
cufflinks 0.231        
cufflinks 0.171        
cufflinks 0.199        
cufflinks 0.151        
cufflinks 0.117        
cufflinks 0.364       High
cufflinks 0.163        
cufflinks 0.115        

0 Strain