Gene : Glyma.13G179200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31579:SF11 - EXPRESSED PROTEIN Genomic Order:  1792
Name:  ? Glyma.13G179200 Secondary Identifier:  ? PAC:30504015
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G179200 0.5kb upstream 0.5kb upstream 3237 true Chr13: 29274535-29277771 Glycine max
Glyma.13G179200 0.5kb upstream 0.5kb upstream 500 false Chr13: 29277272-29277771 Glycine max
Glyma.13G179200 0.5kb downstream 0.5kb downstream 3237 true Chr13: 29274035-29277271 Glycine max
Glyma.13G179200 0.5kb downstream 0.5kb downstream 500 false Chr13: 29274035-29274534 Glycine max
Glyma.13G179200 1.0kb upstream 1.0kb upstream 3737 true Chr13: 29274535-29278271 Glycine max
Glyma.13G179200 1.0kb upstream 1.0kb upstream 1000 false Chr13: 29277272-29278271 Glycine max
Glyma.13G179200 1.0kb downstream 1.0kb downstream 3737 true Chr13: 29273535-29277271 Glycine max
Glyma.13G179200 1.0kb downstream 1.0kb downstream 1000 false Chr13: 29273535-29274534 Glycine max
Glyma.13G179200 2.0kb upstream 2.0kb upstream 4737 true Chr13: 29274535-29279271 Glycine max
Glyma.13G179200 2.0kb upstream 2.0kb upstream 2000 false Chr13: 29277272-29279271 Glycine max
Glyma.13G179200 2.0kb downstream 2.0kb downstream 4737 true Chr13: 29272535-29277271 Glycine max
Glyma.13G179200 2.0kb downstream 2.0kb downstream 2000 false Chr13: 29272535-29274534 Glycine max
Glyma.13G179200 5.0kb upstream 5.0kb upstream 7737 true Chr13: 29274535-29282271 Glycine max
Glyma.13G179200 5.0kb upstream 5.0kb upstream 5000 false Chr13: 29277272-29282271 Glycine max
Glyma.13G179200 5.0kb downstream 5.0kb downstream 7737 true Chr13: 29269535-29277271 Glycine max
Glyma.13G179200 5.0kb downstream 5.0kb downstream 5000 false Chr13: 29269535-29274534 Glycine max
Glyma.13G179200 10.0kb upstream 10.0kb upstream 12737 true Chr13: 29274535-29287271 Glycine max
Glyma.13G179200 10.0kb upstream 10.0kb upstream 10000 false Chr13: 29277272-29287271 Glycine max
Glyma.13G179200 10.0kb downstream 10.0kb downstream 12737 true Chr13: 29264535-29277271 Glycine max
Glyma.13G179200 10.0kb downstream 10.0kb downstream 10000 false Chr13: 29264535-29274534 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298563 5265 Fabidae View MSA
124071276 5270 Rosid View MSA
123751272 5271 Pentapetalae View MSA
122785688 5272 Eudicot View MSA
122045708 5273 Angiosperm View MSA
123429021 5275 Viridiplantae View MSA
121310489 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.871322 0.0 3.16586    
cufflinks 0.135683 0.0 0.535813 Low Low
cufflinks 1.97769 0.0 6.67913    
cufflinks 0.725897 0.0 2.66077    
cufflinks 1.98697 0.0 6.74841    
cufflinks 8.43744 0.0 23.7235   High
cufflinks 0.123178 0.0 0.48823 Low Low
cufflinks 0.060757 0.0 0.247612 Low Low
cufflinks 8.33819 0.0 23.4111   High
cufflinks 0.377       Low
cufflinks 280.696     High High
cufflinks 3.918        
cufflinks 3.739        
cufflinks 5.667        
cufflinks 316.512     High High
cufflinks 3.995        
cufflinks 2.395        
cufflinks 3.44        
cufflinks 0.546        
cufflinks 3.893        
cufflinks 195.509     High High
cufflinks 0.27       Low
cufflinks 0.06     Low Low
cufflinks 113.109     High High
cufflinks 6.286        
cufflinks 73.838     High  

0 Strain