Gene : Glyma.13G180500 G. max Wm82.a2.v1
Defline:  (1 of 9) PF05755 - Rubber elongation factor protein (REF) (REF) Genomic Order:  1805
Name:  ? Glyma.13G180500 Secondary Identifier:  ? PAC:30501051
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0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G180500 0.5kb upstream 0.5kb upstream 1519 true Chr13: 29387943-29389461 Glycine max
Glyma.13G180500 0.5kb upstream 0.5kb upstream 500 false Chr13: 29388962-29389461 Glycine max
Glyma.13G180500 0.5kb downstream 0.5kb downstream 1519 true Chr13: 29387443-29388961 Glycine max
Glyma.13G180500 0.5kb downstream 0.5kb downstream 500 false Chr13: 29387443-29387942 Glycine max
Glyma.13G180500 1.0kb upstream 1.0kb upstream 2019 true Chr13: 29387943-29389961 Glycine max
Glyma.13G180500 1.0kb upstream 1.0kb upstream 1000 false Chr13: 29388962-29389961 Glycine max
Glyma.13G180500 1.0kb downstream 1.0kb downstream 2019 true Chr13: 29386943-29388961 Glycine max
Glyma.13G180500 1.0kb downstream 1.0kb downstream 1000 false Chr13: 29386943-29387942 Glycine max
Glyma.13G180500 2.0kb upstream 2.0kb upstream 3019 true Chr13: 29387943-29390961 Glycine max
Glyma.13G180500 2.0kb upstream 2.0kb upstream 2000 false Chr13: 29388962-29390961 Glycine max
Glyma.13G180500 2.0kb downstream 2.0kb downstream 3019 true Chr13: 29385943-29388961 Glycine max
Glyma.13G180500 2.0kb downstream 2.0kb downstream 2000 false Chr13: 29385943-29387942 Glycine max
Glyma.13G180500 5.0kb upstream 5.0kb upstream 6019 true Chr13: 29387943-29393961 Glycine max
Glyma.13G180500 5.0kb upstream 5.0kb upstream 5000 false Chr13: 29388962-29393961 Glycine max
Glyma.13G180500 5.0kb downstream 5.0kb downstream 6019 true Chr13: 29382943-29388961 Glycine max
Glyma.13G180500 5.0kb downstream 5.0kb downstream 5000 false Chr13: 29382943-29387942 Glycine max
Glyma.13G180500 10.0kb upstream 10.0kb upstream 11019 true Chr13: 29387943-29398961 Glycine max
Glyma.13G180500 10.0kb upstream 10.0kb upstream 10000 false Chr13: 29388962-29398961 Glycine max
Glyma.13G180500 10.0kb downstream 10.0kb downstream 11019 true Chr13: 29377943-29388961 Glycine max
Glyma.13G180500 10.0kb downstream 10.0kb downstream 10000 false Chr13: 29377943-29387942 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121656191 5273 Angiosperm View MSA
122297777 5265 Fabidae View MSA
124036148 5270 Rosid View MSA
123609537 5271 Pentapetalae View MSA
122644185 5272 Eudicot View MSA
120928276 5274 Embryophyte View MSA
122968889 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 32.7179 0.0 87.5255 High  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.103449 0.0 0.421598 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.094        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.53        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain