Gene : Glyma.13G223900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR33199:SF3 - MACPF DOMAIN-CONTAINING PROTEIN CAD1 Genomic Order:  2239
Name:  ? Glyma.13G223900 Secondary Identifier:  ? PAC:30501231
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G223900 0.5kb upstream 0.5kb upstream 7754 true Chr13: 33672010-33679763 Glycine max
Glyma.13G223900 0.5kb upstream 0.5kb upstream 500 false Chr13: 33679264-33679763 Glycine max
Glyma.13G223900 0.5kb downstream 0.5kb downstream 7754 true Chr13: 33671510-33679263 Glycine max
Glyma.13G223900 0.5kb downstream 0.5kb downstream 500 false Chr13: 33671510-33672009 Glycine max
Glyma.13G223900 1.0kb upstream 1.0kb upstream 8254 true Chr13: 33672010-33680263 Glycine max
Glyma.13G223900 1.0kb upstream 1.0kb upstream 1000 false Chr13: 33679264-33680263 Glycine max
Glyma.13G223900 1.0kb downstream 1.0kb downstream 8254 true Chr13: 33671010-33679263 Glycine max
Glyma.13G223900 1.0kb downstream 1.0kb downstream 1000 false Chr13: 33671010-33672009 Glycine max
Glyma.13G223900 2.0kb upstream 2.0kb upstream 9254 true Chr13: 33672010-33681263 Glycine max
Glyma.13G223900 2.0kb upstream 2.0kb upstream 2000 false Chr13: 33679264-33681263 Glycine max
Glyma.13G223900 2.0kb downstream 2.0kb downstream 9254 true Chr13: 33670010-33679263 Glycine max
Glyma.13G223900 2.0kb downstream 2.0kb downstream 2000 false Chr13: 33670010-33672009 Glycine max
Glyma.13G223900 5.0kb upstream 5.0kb upstream 12254 true Chr13: 33672010-33684263 Glycine max
Glyma.13G223900 5.0kb upstream 5.0kb upstream 5000 false Chr13: 33679264-33684263 Glycine max
Glyma.13G223900 5.0kb downstream 5.0kb downstream 12254 true Chr13: 33667010-33679263 Glycine max
Glyma.13G223900 5.0kb downstream 5.0kb downstream 5000 false Chr13: 33667010-33672009 Glycine max
Glyma.13G223900 10.0kb upstream 10.0kb upstream 17254 true Chr13: 33672010-33689263 Glycine max
Glyma.13G223900 10.0kb upstream 10.0kb upstream 10000 false Chr13: 33679264-33689263 Glycine max
Glyma.13G223900 10.0kb downstream 10.0kb downstream 17254 true Chr13: 33662010-33679263 Glycine max
Glyma.13G223900 10.0kb downstream 10.0kb downstream 10000 false Chr13: 33662010-33672009 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306269 5265 Fabidae View MSA
124063432 5270 Rosid View MSA
123741533 5271 Pentapetalae View MSA
122797212 5272 Eudicot View MSA
122044022 5273 Angiosperm View MSA
121349025 5274 Embryophyte View MSA
123381129 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.6756 0.0 10.7033    
cufflinks 3.5967 0.0 10.4959    
cufflinks 3.43696 0.0 10.0494    
cufflinks 3.48759 0.0 10.2056    
cufflinks 5.0757 0.0 14.241    
cufflinks 7.16334 0.0 19.5138   High
cufflinks 3.62171 0.0 10.5706    
cufflinks 5.41756 0.0 15.0779    
cufflinks 5.82146 0.0 16.1036    
cufflinks 5.73       High
cufflinks 4.126        
cufflinks 1.859        
cufflinks 3.534        
cufflinks 2.421        
cufflinks 4.649        
cufflinks 1.579        
cufflinks 8.253     High High
cufflinks 1.69        
cufflinks 1.922        
cufflinks 1.142       Low
cufflinks 3.179        
cufflinks 1.248       Low
cufflinks 2.906        
cufflinks 3.608        
cufflinks 1.508       Low
cufflinks 4.868       High

0 Strain