Gene : Glyma.13G215600 G. max Wm82.a2.v1
Defline:  (1 of 1) PF00097//PF05495//PF14599 - Zinc finger, C3HC4 type (RING finger) (zf-C3HC4) // CHY zinc finger (zf-CHY) // Zinc-ribbon (zinc_ribbon_6) Genomic Order:  2156
Name:  ? Glyma.13G215600 Secondary Identifier:  ? PAC:30501312
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G215600 0.5kb upstream 0.5kb upstream 4708 true Chr13: 32896705-32901412 Glycine max
Glyma.13G215600 0.5kb upstream 0.5kb upstream 500 false Chr13: 32900913-32901412 Glycine max
Glyma.13G215600 0.5kb downstream 0.5kb downstream 4708 true Chr13: 32896205-32900912 Glycine max
Glyma.13G215600 0.5kb downstream 0.5kb downstream 500 false Chr13: 32896205-32896704 Glycine max
Glyma.13G215600 1.0kb upstream 1.0kb upstream 5208 true Chr13: 32896705-32901912 Glycine max
Glyma.13G215600 1.0kb upstream 1.0kb upstream 1000 false Chr13: 32900913-32901912 Glycine max
Glyma.13G215600 1.0kb downstream 1.0kb downstream 5208 true Chr13: 32895705-32900912 Glycine max
Glyma.13G215600 1.0kb downstream 1.0kb downstream 1000 false Chr13: 32895705-32896704 Glycine max
Glyma.13G215600 2.0kb upstream 2.0kb upstream 6208 true Chr13: 32896705-32902912 Glycine max
Glyma.13G215600 2.0kb upstream 2.0kb upstream 2000 false Chr13: 32900913-32902912 Glycine max
Glyma.13G215600 2.0kb downstream 2.0kb downstream 6208 true Chr13: 32894705-32900912 Glycine max
Glyma.13G215600 2.0kb downstream 2.0kb downstream 2000 false Chr13: 32894705-32896704 Glycine max
Glyma.13G215600 5.0kb upstream 5.0kb upstream 9208 true Chr13: 32896705-32905912 Glycine max
Glyma.13G215600 5.0kb upstream 5.0kb upstream 5000 false Chr13: 32900913-32905912 Glycine max
Glyma.13G215600 5.0kb downstream 5.0kb downstream 9208 true Chr13: 32891705-32900912 Glycine max
Glyma.13G215600 5.0kb downstream 5.0kb downstream 5000 false Chr13: 32891705-32896704 Glycine max
Glyma.13G215600 10.0kb upstream 10.0kb upstream 14208 true Chr13: 32896705-32910912 Glycine max
Glyma.13G215600 10.0kb upstream 10.0kb upstream 10000 false Chr13: 32900913-32910912 Glycine max
Glyma.13G215600 10.0kb downstream 10.0kb downstream 14208 true Chr13: 32886705-32900912 Glycine max
Glyma.13G215600 10.0kb downstream 10.0kb downstream 10000 false Chr13: 32886705-32896704 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303796 5265 Fabidae View MSA
124067904 5270 Rosid View MSA
123739632 5271 Pentapetalae View MSA
122785839 5272 Eudicot View MSA
122043981 5273 Angiosperm View MSA
123428990 5275 Viridiplantae View MSA
121310221 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.48238 0.0 28.6538    
cufflinks 7.88078 0.0 32.4488    
cufflinks 10.1918 0.0 38.9966   High
cufflinks 8.41209 0.0 39.2153    
cufflinks 4.53946 0.0 23.1913    
cufflinks 3.01444 0.0 14.5704   Low
cufflinks 2.78054 0.0 14.139   Low
cufflinks 5.96549 0.0 27.3656    
cufflinks 4.79801 0.0 23.6785    
cufflinks 0.448        
cufflinks 2.593        
cufflinks 0.932        
cufflinks 0.108       Low
cufflinks 0.365       Low
cufflinks 1.226        
cufflinks 4.395       High
cufflinks 0.374       Low
cufflinks 1.073        
cufflinks 0.939        
cufflinks 7.042     High High
cufflinks 1.618        
cufflinks 4.673       High
cufflinks 2.233        
cufflinks 1.954        
cufflinks 6.942     High High
cufflinks 0.729        

0 Strain