Gene : Glyma.13G218400 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR34777:SF1 - VQ MOTIF-CONTAINING PROTEIN Genomic Order:  2184
Name:  ? Glyma.13G218400 Secondary Identifier:  ? PAC:30502877
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G218400 0.5kb upstream 0.5kb upstream 803 true Chr13: 33181476-33182278 Glycine max
Glyma.13G218400 0.5kb upstream 0.5kb upstream 500 false Chr13: 33181779-33182278 Glycine max
Glyma.13G218400 0.5kb downstream 0.5kb downstream 803 true Chr13: 33180976-33181778 Glycine max
Glyma.13G218400 0.5kb downstream 0.5kb downstream 500 false Chr13: 33180976-33181475 Glycine max
Glyma.13G218400 1.0kb upstream 1.0kb upstream 1303 true Chr13: 33181476-33182778 Glycine max
Glyma.13G218400 1.0kb upstream 1.0kb upstream 1000 false Chr13: 33181779-33182778 Glycine max
Glyma.13G218400 1.0kb downstream 1.0kb downstream 1303 true Chr13: 33180476-33181778 Glycine max
Glyma.13G218400 1.0kb downstream 1.0kb downstream 1000 false Chr13: 33180476-33181475 Glycine max
Glyma.13G218400 2.0kb upstream 2.0kb upstream 2303 true Chr13: 33181476-33183778 Glycine max
Glyma.13G218400 2.0kb upstream 2.0kb upstream 2000 false Chr13: 33181779-33183778 Glycine max
Glyma.13G218400 2.0kb downstream 2.0kb downstream 2303 true Chr13: 33179476-33181778 Glycine max
Glyma.13G218400 2.0kb downstream 2.0kb downstream 2000 false Chr13: 33179476-33181475 Glycine max
Glyma.13G218400 5.0kb upstream 5.0kb upstream 5303 true Chr13: 33181476-33186778 Glycine max
Glyma.13G218400 5.0kb upstream 5.0kb upstream 5000 false Chr13: 33181779-33186778 Glycine max
Glyma.13G218400 5.0kb downstream 5.0kb downstream 5303 true Chr13: 33176476-33181778 Glycine max
Glyma.13G218400 5.0kb downstream 5.0kb downstream 5000 false Chr13: 33176476-33181475 Glycine max
Glyma.13G218400 10.0kb upstream 10.0kb upstream 10303 true Chr13: 33181476-33191778 Glycine max
Glyma.13G218400 10.0kb upstream 10.0kb upstream 10000 false Chr13: 33181779-33191778 Glycine max
Glyma.13G218400 10.0kb downstream 10.0kb downstream 10303 true Chr13: 33171476-33181778 Glycine max
Glyma.13G218400 10.0kb downstream 10.0kb downstream 10000 false Chr13: 33171476-33181475 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026461 5273 Angiosperm View MSA
122298557 5265 Fabidae View MSA
124050155 5270 Rosid View MSA
123744131 5271 Pentapetalae View MSA
122770912 5272 Eudicot View MSA
121296343 5274 Embryophyte View MSA
123334522 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.37327 0.0 23.3706    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.284       Low
cufflinks 1.819        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.373        
cufflinks 4.421       High
cufflinks 1.548        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.087     Low Low
cufflinks 1.827        
cufflinks 1.35        
cufflinks 3.751       High
cufflinks 0.762        
cufflinks 1.431        
cufflinks 1.259        
cufflinks 0.991        

0 Strain