Gene : Glyma.13G209100 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR11088//PTHR11088:SF34 - TRNA DELTA 2 -ISOPENTENYLPYROPHOSPHATE TRANSFERASE-RELATED Genomic Order:  2091
Name:  ? Glyma.13G209100 Secondary Identifier:  ? PAC:30505879
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-2681 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G209100 0.5kb upstream 0.5kb upstream 1186 true Chr13: 32310192-32311377 Glycine max
Glyma.13G209100 0.5kb upstream 0.5kb upstream 500 false Chr13: 32310192-32310691 Glycine max
Glyma.13G209100 0.5kb downstream 0.5kb downstream 1186 true Chr13: 32310692-32311877 Glycine max
Glyma.13G209100 0.5kb downstream 0.5kb downstream 500 false Chr13: 32311378-32311877 Glycine max
Glyma.13G209100 1.0kb upstream 1.0kb upstream 1686 true Chr13: 32309692-32311377 Glycine max
Glyma.13G209100 1.0kb upstream 1.0kb upstream 1000 false Chr13: 32309692-32310691 Glycine max
Glyma.13G209100 1.0kb downstream 1.0kb downstream 1686 true Chr13: 32310692-32312377 Glycine max
Glyma.13G209100 1.0kb downstream 1.0kb downstream 1000 false Chr13: 32311378-32312377 Glycine max
Glyma.13G209100 2.0kb upstream 2.0kb upstream 2686 true Chr13: 32308692-32311377 Glycine max
Glyma.13G209100 2.0kb upstream 2.0kb upstream 2000 false Chr13: 32308692-32310691 Glycine max
Glyma.13G209100 2.0kb downstream 2.0kb downstream 2686 true Chr13: 32310692-32313377 Glycine max
Glyma.13G209100 2.0kb downstream 2.0kb downstream 2000 false Chr13: 32311378-32313377 Glycine max
Glyma.13G209100 5.0kb upstream 5.0kb upstream 5686 true Chr13: 32305692-32311377 Glycine max
Glyma.13G209100 5.0kb upstream 5.0kb upstream 5000 false Chr13: 32305692-32310691 Glycine max
Glyma.13G209100 5.0kb downstream 5.0kb downstream 5686 true Chr13: 32310692-32316377 Glycine max
Glyma.13G209100 5.0kb downstream 5.0kb downstream 5000 false Chr13: 32311378-32316377 Glycine max
Glyma.13G209100 10.0kb upstream 10.0kb upstream 10686 true Chr13: 32300692-32311377 Glycine max
Glyma.13G209100 10.0kb upstream 10.0kb upstream 10000 false Chr13: 32300692-32310691 Glycine max
Glyma.13G209100 10.0kb downstream 10.0kb downstream 10686 true Chr13: 32310692-32321377 Glycine max
Glyma.13G209100 10.0kb downstream 10.0kb downstream 10000 false Chr13: 32311378-32321377 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121609735 5273 Angiosperm Singleton cluster - no MSA
122242093 5265 Fabidae Singleton cluster - no MSA
123986843 5270 Rosid Singleton cluster - no MSA
123562165 5271 Pentapetalae Singleton cluster - no MSA
122596952 5272 Eudicot Singleton cluster - no MSA
120881983 5274 Embryophyte Singleton cluster - no MSA
122922828 5275 Viridiplantae Singleton cluster - no MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.172266 0.0 0.694695 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0708866 0.0 0.303299 Low Low
cufflinks 5.84806 0.0 19.1712   High
cufflinks 0.76237 0.0 2.88965    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 3.17027 0.0 11.0974    
cufflinks 1.42826 0.0 5.26982    
cufflinks 0.412        
cufflinks 1.817       High
cufflinks 0.459        
cufflinks 1.196        
cufflinks 0.355        
cufflinks 0.388        
cufflinks 0.024     Low Low
cufflinks 0.887        
cufflinks 0.702        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.075     Low Low
cufflinks 1.449        
cufflinks 0.023     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.087        
cufflinks 0.053     Low Low
cufflinks 1.449        

0 Strain