Gene : Glyma.13G212200 G. max Wm82.a2.v1
Defline:  (1 of 2) KOG1003//KOG2991//KOG4172 - Actin filament-coating protein tropomyosin // Splicing regulator // Predicted E3 ubiquitin ligase Genomic Order:  2122
Name:  ? Glyma.13G212200 Secondary Identifier:  ? PAC:30501948
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G212200 0.5kb upstream 0.5kb upstream 4981 true Chr13: 32586034-32591014 Glycine max
Glyma.13G212200 0.5kb upstream 0.5kb upstream 500 false Chr13: 32586034-32586533 Glycine max
Glyma.13G212200 0.5kb downstream 0.5kb downstream 4981 true Chr13: 32586534-32591514 Glycine max
Glyma.13G212200 0.5kb downstream 0.5kb downstream 500 false Chr13: 32591015-32591514 Glycine max
Glyma.13G212200 1.0kb upstream 1.0kb upstream 5481 true Chr13: 32585534-32591014 Glycine max
Glyma.13G212200 1.0kb upstream 1.0kb upstream 1000 false Chr13: 32585534-32586533 Glycine max
Glyma.13G212200 1.0kb downstream 1.0kb downstream 5481 true Chr13: 32586534-32592014 Glycine max
Glyma.13G212200 1.0kb downstream 1.0kb downstream 1000 false Chr13: 32591015-32592014 Glycine max
Glyma.13G212200 2.0kb upstream 2.0kb upstream 6481 true Chr13: 32584534-32591014 Glycine max
Glyma.13G212200 2.0kb upstream 2.0kb upstream 2000 false Chr13: 32584534-32586533 Glycine max
Glyma.13G212200 2.0kb downstream 2.0kb downstream 6481 true Chr13: 32586534-32593014 Glycine max
Glyma.13G212200 2.0kb downstream 2.0kb downstream 2000 false Chr13: 32591015-32593014 Glycine max
Glyma.13G212200 5.0kb upstream 5.0kb upstream 9481 true Chr13: 32581534-32591014 Glycine max
Glyma.13G212200 5.0kb upstream 5.0kb upstream 5000 false Chr13: 32581534-32586533 Glycine max
Glyma.13G212200 5.0kb downstream 5.0kb downstream 9481 true Chr13: 32586534-32596014 Glycine max
Glyma.13G212200 5.0kb downstream 5.0kb downstream 5000 false Chr13: 32591015-32596014 Glycine max
Glyma.13G212200 10.0kb upstream 10.0kb upstream 14481 true Chr13: 32576534-32591014 Glycine max
Glyma.13G212200 10.0kb upstream 10.0kb upstream 10000 false Chr13: 32576534-32586533 Glycine max
Glyma.13G212200 10.0kb downstream 10.0kb downstream 14481 true Chr13: 32586534-32601014 Glycine max
Glyma.13G212200 10.0kb downstream 10.0kb downstream 10000 false Chr13: 32591015-32601014 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311766 5265 Fabidae View MSA
124063927 5270 Rosid View MSA
123743659 5271 Pentapetalae View MSA
122789603 5272 Eudicot View MSA
122049733 5273 Angiosperm View MSA
121349684 5274 Embryophyte View MSA
123427372 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.6295 0.0 28.4366    
cufflinks 10.2751 0.0 27.4727    
cufflinks 9.65116 0.0 25.7932    
cufflinks 10.6932 0.0 28.6291    
cufflinks 9.76818 0.0 26.0855    
cufflinks 10.4475 0.0 27.9403    
cufflinks 10.3257 0.0 27.5909    
cufflinks 10.7271 0.0 28.7211    
cufflinks 16.0111 0.0 43.6771   High
cufflinks 9.003     High  
cufflinks 7.737     High  
cufflinks 12.856     High High
cufflinks 10.857     High  
cufflinks 11.857     High  
cufflinks 9.703     High  
cufflinks 9.809     High  
cufflinks 4.013       Low
cufflinks 15.112     High High
cufflinks 9.605     High  
cufflinks 10.07     High  
cufflinks 8.132     High  
cufflinks 10.953     High  
cufflinks 7.309        
cufflinks 9.497     High  
cufflinks 10.386     High  
cufflinks 7.483     High  

0 Strain