Gene : Glyma.13G245900 G. max Wm82.a2.v1
Defline:  (1 of 7) PTHR23336:SF10 - B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1-RELATED Genomic Order:  2459
Name:  ? Glyma.13G245900 Secondary Identifier:  ? PAC:30502234
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G245900 0.5kb upstream 0.5kb upstream 10665 true Chr13: 35481859-35492523 Glycine max
Glyma.13G245900 0.5kb upstream 0.5kb upstream 500 false Chr13: 35492024-35492523 Glycine max
Glyma.13G245900 0.5kb downstream 0.5kb downstream 10665 true Chr13: 35481359-35492023 Glycine max
Glyma.13G245900 0.5kb downstream 0.5kb downstream 500 false Chr13: 35481359-35481858 Glycine max
Glyma.13G245900 1.0kb upstream 1.0kb upstream 11165 true Chr13: 35481859-35493023 Glycine max
Glyma.13G245900 1.0kb upstream 1.0kb upstream 1000 false Chr13: 35492024-35493023 Glycine max
Glyma.13G245900 1.0kb downstream 1.0kb downstream 11165 true Chr13: 35480859-35492023 Glycine max
Glyma.13G245900 1.0kb downstream 1.0kb downstream 1000 false Chr13: 35480859-35481858 Glycine max
Glyma.13G245900 2.0kb upstream 2.0kb upstream 12165 true Chr13: 35481859-35494023 Glycine max
Glyma.13G245900 2.0kb upstream 2.0kb upstream 2000 false Chr13: 35492024-35494023 Glycine max
Glyma.13G245900 2.0kb downstream 2.0kb downstream 12165 true Chr13: 35479859-35492023 Glycine max
Glyma.13G245900 2.0kb downstream 2.0kb downstream 2000 false Chr13: 35479859-35481858 Glycine max
Glyma.13G245900 5.0kb upstream 5.0kb upstream 15165 true Chr13: 35481859-35497023 Glycine max
Glyma.13G245900 5.0kb upstream 5.0kb upstream 5000 false Chr13: 35492024-35497023 Glycine max
Glyma.13G245900 5.0kb downstream 5.0kb downstream 15165 true Chr13: 35476859-35492023 Glycine max
Glyma.13G245900 5.0kb downstream 5.0kb downstream 5000 false Chr13: 35476859-35481858 Glycine max
Glyma.13G245900 10.0kb upstream 10.0kb upstream 20165 true Chr13: 35481859-35502023 Glycine max
Glyma.13G245900 10.0kb upstream 10.0kb upstream 10000 false Chr13: 35492024-35502023 Glycine max
Glyma.13G245900 10.0kb downstream 10.0kb downstream 20165 true Chr13: 35471859-35492023 Glycine max
Glyma.13G245900 10.0kb downstream 10.0kb downstream 10000 false Chr13: 35471859-35481858 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303955 5265 Fabidae View MSA
124061756 5270 Rosid View MSA
123749673 5271 Pentapetalae View MSA
122797219 5272 Eudicot View MSA
122049123 5273 Angiosperm View MSA
121350931 5274 Embryophyte View MSA
123428387 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.6968 0.0 34.1264   High
cufflinks 9.52862 0.0 25.4326    
cufflinks 10.5727 0.0 28.2754    
cufflinks 8.41897 0.0 22.4614    
cufflinks 6.97231 0.0 18.6473    
cufflinks 5.96068 0.0 16.0139   Low
cufflinks 9.32648 0.0 24.887    
cufflinks 7.53931 0.0 20.1314    
cufflinks 8.10843 0.0 21.6367    
cufflinks 4.596        
cufflinks 5.27        
cufflinks 4.568        
cufflinks 2.672       Low
cufflinks 2.44       Low
cufflinks 6.925     High  
cufflinks 4.534        
cufflinks 9.447     High High
cufflinks 4.495        
cufflinks 6.061        
cufflinks 4.479        
cufflinks 8.223     High High
cufflinks 4.966        
cufflinks 7.013        
cufflinks 6.011        
cufflinks 4.534        
cufflinks 6.138        

0 Strain