Gene : Glyma.13G235200 G. max Wm82.a2.v1
Defline:  (1 of 24) PF12854//PF13041 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  2352
Name:  ? Glyma.13G235200 Secondary Identifier:  ? PAC:30502178
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G235200 0.5kb upstream 0.5kb upstream 3522 true Chr13: 34584405-34587926 Glycine max
Glyma.13G235200 0.5kb upstream 0.5kb upstream 500 false Chr13: 34587427-34587926 Glycine max
Glyma.13G235200 0.5kb downstream 0.5kb downstream 3522 true Chr13: 34583905-34587426 Glycine max
Glyma.13G235200 0.5kb downstream 0.5kb downstream 500 false Chr13: 34583905-34584404 Glycine max
Glyma.13G235200 1.0kb upstream 1.0kb upstream 4022 true Chr13: 34584405-34588426 Glycine max
Glyma.13G235200 1.0kb upstream 1.0kb upstream 1000 false Chr13: 34587427-34588426 Glycine max
Glyma.13G235200 1.0kb downstream 1.0kb downstream 4022 true Chr13: 34583405-34587426 Glycine max
Glyma.13G235200 1.0kb downstream 1.0kb downstream 1000 false Chr13: 34583405-34584404 Glycine max
Glyma.13G235200 2.0kb upstream 2.0kb upstream 5022 true Chr13: 34584405-34589426 Glycine max
Glyma.13G235200 2.0kb upstream 2.0kb upstream 2000 false Chr13: 34587427-34589426 Glycine max
Glyma.13G235200 2.0kb downstream 2.0kb downstream 5022 true Chr13: 34582405-34587426 Glycine max
Glyma.13G235200 2.0kb downstream 2.0kb downstream 2000 false Chr13: 34582405-34584404 Glycine max
Glyma.13G235200 5.0kb upstream 5.0kb upstream 8022 true Chr13: 34584405-34592426 Glycine max
Glyma.13G235200 5.0kb upstream 5.0kb upstream 5000 false Chr13: 34587427-34592426 Glycine max
Glyma.13G235200 5.0kb downstream 5.0kb downstream 8022 true Chr13: 34579405-34587426 Glycine max
Glyma.13G235200 5.0kb downstream 5.0kb downstream 5000 false Chr13: 34579405-34584404 Glycine max
Glyma.13G235200 10.0kb upstream 10.0kb upstream 13022 true Chr13: 34584405-34597426 Glycine max
Glyma.13G235200 10.0kb upstream 10.0kb upstream 10000 false Chr13: 34587427-34597426 Glycine max
Glyma.13G235200 10.0kb downstream 10.0kb downstream 13022 true Chr13: 34574405-34587426 Glycine max
Glyma.13G235200 10.0kb downstream 10.0kb downstream 10000 false Chr13: 34574405-34584404 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302355 5265 Fabidae View MSA
124068933 5270 Rosid View MSA
123750623 5271 Pentapetalae View MSA
122791820 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.39333 0.0 6.59007    
cufflinks 2.2149 0.0 9.0216   High
cufflinks 1.4688 0.0 6.76554    
cufflinks 0.899994 0.0 3.9262    
cufflinks 1.15625 0.0 5.75719    
cufflinks 0.755125 0.0 3.26616   Low
cufflinks 1.07736 0.0 4.37921    
cufflinks 0.901143 0.0 4.74674    
cufflinks 1.34857 0.0 6.54602    
cufflinks 0.258        
cufflinks 0.162       Low
cufflinks 0.56       High
cufflinks 0.5       High
cufflinks 0.679       High
cufflinks 0.275        
cufflinks 0.244        
cufflinks 0.239        
cufflinks 0.401        
cufflinks 0.503       High
cufflinks 0.24        
cufflinks 0.17       Low
cufflinks 0.242        
cufflinks 0.339        
cufflinks 0.22        
cufflinks 0.341        
cufflinks 0.203        

0 Strain