Gene : Glyma.13G238000 G. max Wm82.a2.v1
Defline:  (1 of 2) KOG2162 - Nonsense-mediated mRNA decay protein Genomic Order:  2380
Name:  ? Glyma.13G238000 Secondary Identifier:  ? PAC:30501419
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G238000 0.5kb upstream 0.5kb upstream 6662 true Chr13: 34821490-34828151 Glycine max
Glyma.13G238000 0.5kb upstream 0.5kb upstream 500 false Chr13: 34827652-34828151 Glycine max
Glyma.13G238000 0.5kb downstream 0.5kb downstream 6662 true Chr13: 34820990-34827651 Glycine max
Glyma.13G238000 0.5kb downstream 0.5kb downstream 500 false Chr13: 34820990-34821489 Glycine max
Glyma.13G238000 1.0kb upstream 1.0kb upstream 7162 true Chr13: 34821490-34828651 Glycine max
Glyma.13G238000 1.0kb upstream 1.0kb upstream 1000 false Chr13: 34827652-34828651 Glycine max
Glyma.13G238000 1.0kb downstream 1.0kb downstream 7162 true Chr13: 34820490-34827651 Glycine max
Glyma.13G238000 1.0kb downstream 1.0kb downstream 1000 false Chr13: 34820490-34821489 Glycine max
Glyma.13G238000 2.0kb upstream 2.0kb upstream 8162 true Chr13: 34821490-34829651 Glycine max
Glyma.13G238000 2.0kb upstream 2.0kb upstream 2000 false Chr13: 34827652-34829651 Glycine max
Glyma.13G238000 2.0kb downstream 2.0kb downstream 8162 true Chr13: 34819490-34827651 Glycine max
Glyma.13G238000 2.0kb downstream 2.0kb downstream 2000 false Chr13: 34819490-34821489 Glycine max
Glyma.13G238000 5.0kb upstream 5.0kb upstream 11162 true Chr13: 34821490-34832651 Glycine max
Glyma.13G238000 5.0kb upstream 5.0kb upstream 5000 false Chr13: 34827652-34832651 Glycine max
Glyma.13G238000 5.0kb downstream 5.0kb downstream 11162 true Chr13: 34816490-34827651 Glycine max
Glyma.13G238000 5.0kb downstream 5.0kb downstream 5000 false Chr13: 34816490-34821489 Glycine max
Glyma.13G238000 10.0kb upstream 10.0kb upstream 16162 true Chr13: 34821490-34837651 Glycine max
Glyma.13G238000 10.0kb upstream 10.0kb upstream 10000 false Chr13: 34827652-34837651 Glycine max
Glyma.13G238000 10.0kb downstream 10.0kb downstream 16162 true Chr13: 34811490-34827651 Glycine max
Glyma.13G238000 10.0kb downstream 10.0kb downstream 10000 false Chr13: 34811490-34821489 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300747 5265 Fabidae View MSA
124050275 5270 Rosid View MSA
123740560 5271 Pentapetalae View MSA
122792675 5272 Eudicot View MSA
122043425 5273 Angiosperm View MSA
121310120 5274 Embryophyte View MSA
123426231 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.41934 0.0 8.63028    
cufflinks 3.65792 0.0 13.651    
cufflinks 5.70972 0.0 22.344   High
cufflinks 8.71308 0.0 36.5073   High
cufflinks 2.60659 0.0 11.8507    
cufflinks 2.18356 0.0 9.29952   Low
cufflinks 2.867 0.0 11.5502    
cufflinks 4.4622 0.0 15.9156    
cufflinks 3.55577 0.0 15.1392    
cufflinks 0.23        
cufflinks 0.809       High
cufflinks 0.733        
cufflinks 0.255        
cufflinks 0.071     Low Low
cufflinks 0.439        
cufflinks 0.342        
cufflinks 0.095       Low
cufflinks 0.676        
cufflinks 0.49        
cufflinks 0.458        
cufflinks 0.998       High
cufflinks 0.313        
cufflinks 0.16       Low
cufflinks 0.664        
cufflinks 0.394        
cufflinks 0.316        

0 Strain