Gene : Glyma.13G239000 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11771//PTHR11771:SF56 - LIPOXYGENASE Genomic Order:  2390
Name:  ? Glyma.13G239000 Secondary Identifier:  ? PAC:30505252
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-735 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G239000 0.5kb upstream 0.5kb upstream 5502 true Chr13: 34926963-34932464 Glycine max
Glyma.13G239000 0.5kb upstream 0.5kb upstream 500 false Chr13: 34931965-34932464 Glycine max
Glyma.13G239000 0.5kb downstream 0.5kb downstream 5502 true Chr13: 34926463-34931964 Glycine max
Glyma.13G239000 0.5kb downstream 0.5kb downstream 500 false Chr13: 34926463-34926962 Glycine max
Glyma.13G239000 1.0kb upstream 1.0kb upstream 6002 true Chr13: 34926963-34932964 Glycine max
Glyma.13G239000 1.0kb upstream 1.0kb upstream 1000 false Chr13: 34931965-34932964 Glycine max
Glyma.13G239000 1.0kb downstream 1.0kb downstream 6002 true Chr13: 34925963-34931964 Glycine max
Glyma.13G239000 1.0kb downstream 1.0kb downstream 1000 false Chr13: 34925963-34926962 Glycine max
Glyma.13G239000 2.0kb upstream 2.0kb upstream 7002 true Chr13: 34926963-34933964 Glycine max
Glyma.13G239000 2.0kb upstream 2.0kb upstream 2000 false Chr13: 34931965-34933964 Glycine max
Glyma.13G239000 2.0kb downstream 2.0kb downstream 7002 true Chr13: 34924963-34931964 Glycine max
Glyma.13G239000 2.0kb downstream 2.0kb downstream 2000 false Chr13: 34924963-34926962 Glycine max
Glyma.13G239000 5.0kb upstream 5.0kb upstream 10002 true Chr13: 34926963-34936964 Glycine max
Glyma.13G239000 5.0kb upstream 5.0kb upstream 5000 false Chr13: 34931965-34936964 Glycine max
Glyma.13G239000 5.0kb downstream 5.0kb downstream 10002 true Chr13: 34921963-34931964 Glycine max
Glyma.13G239000 5.0kb downstream 5.0kb downstream 5000 false Chr13: 34921963-34926962 Glycine max
Glyma.13G239000 10.0kb upstream 10.0kb upstream 15002 true Chr13: 34926963-34941964 Glycine max
Glyma.13G239000 10.0kb upstream 10.0kb upstream 10000 false Chr13: 34931965-34941964 Glycine max
Glyma.13G239000 10.0kb downstream 10.0kb downstream 15002 true Chr13: 34916963-34931964 Glycine max
Glyma.13G239000 10.0kb downstream 10.0kb downstream 10000 false Chr13: 34916963-34926962 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313954 5265 Fabidae View MSA
124060591 5270 Rosid View MSA
123743150 5271 Pentapetalae View MSA
122789243 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.766565 0.0 2.61906    
cufflinks 0.231781 0.0 0.861973 Low  
cufflinks 4.28436 0.0 11.7706   High
cufflinks 0.541376 0.0 1.90808    
cufflinks 0.203996 0.0 0.763569 Low  
cufflinks 0.358841 0.0 1.30255    
cufflinks 0.114925 0.0 0.441454 Low Low
cufflinks 0.317505 0.0 1.16073    
cufflinks 0.290085 0.0 1.06636    
cufflinks 1.103        
cufflinks 0.052     Low  
cufflinks 6.406       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.019     Low Low
cufflinks 0.668        
cufflinks 0.215        
cufflinks 2.617        
cufflinks 1.385        
cufflinks 1.152        
cufflinks 0.005     Low Low
cufflinks 0.983        
cufflinks 14.174     High High
cufflinks 0.015     Low Low
cufflinks 0.751        
cufflinks 0.083        

0 Strain