Gene : Glyma.13G240700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12879 - SPHINGOLIPID DELTA 4 DESATURASE/C-4 HYDROXYLASE PROTEIN DES2 Genomic Order:  2407
Name:  ? Glyma.13G240700 Secondary Identifier:  ? PAC:30501817
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G240700 0.5kb upstream 0.5kb upstream 2773 true Chr13: 35060887-35063659 Glycine max
Glyma.13G240700 0.5kb upstream 0.5kb upstream 500 false Chr13: 35063160-35063659 Glycine max
Glyma.13G240700 0.5kb downstream 0.5kb downstream 2773 true Chr13: 35060387-35063159 Glycine max
Glyma.13G240700 0.5kb downstream 0.5kb downstream 500 false Chr13: 35060387-35060886 Glycine max
Glyma.13G240700 1.0kb upstream 1.0kb upstream 3273 true Chr13: 35060887-35064159 Glycine max
Glyma.13G240700 1.0kb upstream 1.0kb upstream 1000 false Chr13: 35063160-35064159 Glycine max
Glyma.13G240700 1.0kb downstream 1.0kb downstream 3273 true Chr13: 35059887-35063159 Glycine max
Glyma.13G240700 1.0kb downstream 1.0kb downstream 1000 false Chr13: 35059887-35060886 Glycine max
Glyma.13G240700 2.0kb upstream 2.0kb upstream 4273 true Chr13: 35060887-35065159 Glycine max
Glyma.13G240700 2.0kb upstream 2.0kb upstream 2000 false Chr13: 35063160-35065159 Glycine max
Glyma.13G240700 2.0kb downstream 2.0kb downstream 4273 true Chr13: 35058887-35063159 Glycine max
Glyma.13G240700 2.0kb downstream 2.0kb downstream 2000 false Chr13: 35058887-35060886 Glycine max
Glyma.13G240700 5.0kb upstream 5.0kb upstream 7273 true Chr13: 35060887-35068159 Glycine max
Glyma.13G240700 5.0kb upstream 5.0kb upstream 5000 false Chr13: 35063160-35068159 Glycine max
Glyma.13G240700 5.0kb downstream 5.0kb downstream 7273 true Chr13: 35055887-35063159 Glycine max
Glyma.13G240700 5.0kb downstream 5.0kb downstream 5000 false Chr13: 35055887-35060886 Glycine max
Glyma.13G240700 10.0kb upstream 10.0kb upstream 12273 true Chr13: 35060887-35073159 Glycine max
Glyma.13G240700 10.0kb upstream 10.0kb upstream 10000 false Chr13: 35063160-35073159 Glycine max
Glyma.13G240700 10.0kb downstream 10.0kb downstream 12273 true Chr13: 35050887-35063159 Glycine max
Glyma.13G240700 10.0kb downstream 10.0kb downstream 10000 false Chr13: 35050887-35060886 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305345 5265 Fabidae View MSA
124069384 5270 Rosid View MSA
123741944 5271 Pentapetalae View MSA
122796748 5272 Eudicot View MSA
122048709 5273 Angiosperm View MSA
121348431 5274 Embryophyte View MSA
123425717 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.700726 0.0 2.59526   Low
cufflinks 6.74769 0.0 19.7133    
cufflinks 82.6045 0.0 237.698 High High
cufflinks 7.31838 0.0 21.1527    
cufflinks 15.0289 0.0 40.7175    
cufflinks 9.92695 0.0 27.705    
cufflinks 11.7961 0.0 32.5226    
cufflinks 10.4763 0.0 29.0901    
cufflinks 9.73413 0.0 27.2167    
cufflinks 7.984     High High
cufflinks 1.816        
cufflinks 13.686     High High
cufflinks 5.249        
cufflinks 7.883     High High
cufflinks 3.0        
cufflinks 2.621        
cufflinks 0.885       Low
cufflinks 10.121     High High
cufflinks 4.211        
cufflinks 2.572        
cufflinks 1.532        
cufflinks 2.36        
cufflinks 3.419        
cufflinks 1.397       Low
cufflinks 2.192        
cufflinks 2.141        

0 Strain