Gene : Glyma.13G280700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13251 - EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 Genomic Order:  2807
Name:  ? Glyma.13G280700 Secondary Identifier:  ? PAC:30503776
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G280700 0.5kb upstream 0.5kb upstream 12895 true Chr13: 38188896-38201790 Glycine max
Glyma.13G280700 0.5kb upstream 0.5kb upstream 500 false Chr13: 38188896-38189395 Glycine max
Glyma.13G280700 0.5kb downstream 0.5kb downstream 12895 true Chr13: 38189396-38202290 Glycine max
Glyma.13G280700 0.5kb downstream 0.5kb downstream 500 false Chr13: 38201791-38202290 Glycine max
Glyma.13G280700 1.0kb upstream 1.0kb upstream 13395 true Chr13: 38188396-38201790 Glycine max
Glyma.13G280700 1.0kb upstream 1.0kb upstream 1000 false Chr13: 38188396-38189395 Glycine max
Glyma.13G280700 1.0kb downstream 1.0kb downstream 13395 true Chr13: 38189396-38202790 Glycine max
Glyma.13G280700 1.0kb downstream 1.0kb downstream 1000 false Chr13: 38201791-38202790 Glycine max
Glyma.13G280700 2.0kb upstream 2.0kb upstream 14395 true Chr13: 38187396-38201790 Glycine max
Glyma.13G280700 2.0kb upstream 2.0kb upstream 2000 false Chr13: 38187396-38189395 Glycine max
Glyma.13G280700 2.0kb downstream 2.0kb downstream 14395 true Chr13: 38189396-38203790 Glycine max
Glyma.13G280700 2.0kb downstream 2.0kb downstream 2000 false Chr13: 38201791-38203790 Glycine max
Glyma.13G280700 5.0kb upstream 5.0kb upstream 17395 true Chr13: 38184396-38201790 Glycine max
Glyma.13G280700 5.0kb upstream 5.0kb upstream 5000 false Chr13: 38184396-38189395 Glycine max
Glyma.13G280700 5.0kb downstream 5.0kb downstream 17395 true Chr13: 38189396-38206790 Glycine max
Glyma.13G280700 5.0kb downstream 5.0kb downstream 5000 false Chr13: 38201791-38206790 Glycine max
Glyma.13G280700 10.0kb upstream 10.0kb upstream 22395 true Chr13: 38179396-38201790 Glycine max
Glyma.13G280700 10.0kb upstream 10.0kb upstream 10000 false Chr13: 38179396-38189395 Glycine max
Glyma.13G280700 10.0kb downstream 10.0kb downstream 22395 true Chr13: 38189396-38211790 Glycine max
Glyma.13G280700 10.0kb downstream 10.0kb downstream 10000 false Chr13: 38201791-38211790 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310428 5265 Fabidae View MSA
124063131 5270 Rosid View MSA
123747515 5271 Pentapetalae View MSA
122790738 5272 Eudicot View MSA
122046287 5273 Angiosperm View MSA
121348694 5274 Embryophyte View MSA
123380976 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.37521 0.0 22.379    
cufflinks 7.73673 0.0 20.6529    
cufflinks 4.35657 0.0 11.7392   Low
cufflinks 9.96216 0.0 26.762    
cufflinks 11.2572 0.0 30.3781   High
cufflinks 5.04429 0.0 13.5262   Low
cufflinks 8.56401 0.0 22.8865    
cufflinks 8.22348 0.0 21.9739    
cufflinks 7.20866 0.0 19.2332    
cufflinks 4.818       High
cufflinks 0.615       Low
cufflinks 2.716        
cufflinks 5.768       High
cufflinks 7.117     High High
cufflinks 1.579        
cufflinks 2.45        
cufflinks 2.029        
cufflinks 4.339        
cufflinks 4.863       High
cufflinks 1.952        
cufflinks 1.255        
cufflinks 2.442        
cufflinks 2.743        
cufflinks 0.873       Low
cufflinks 2.08        
cufflinks 1.741        

0 Strain