Gene : Glyma.13G281200 G. max Wm82.a2.v1
Defline:  (1 of 9) PF06830 - Root cap (Root_cap) Genomic Order:  2812
Name:  ? Glyma.13G281200 Secondary Identifier:  ? PAC:30502644
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G281200 0.5kb upstream 0.5kb upstream 2079 true Chr13: 38269140-38271218 Glycine max
Glyma.13G281200 0.5kb upstream 0.5kb upstream 500 false Chr13: 38269140-38269639 Glycine max
Glyma.13G281200 0.5kb downstream 0.5kb downstream 2079 true Chr13: 38269640-38271718 Glycine max
Glyma.13G281200 0.5kb downstream 0.5kb downstream 500 false Chr13: 38271219-38271718 Glycine max
Glyma.13G281200 1.0kb upstream 1.0kb upstream 2579 true Chr13: 38268640-38271218 Glycine max
Glyma.13G281200 1.0kb upstream 1.0kb upstream 1000 false Chr13: 38268640-38269639 Glycine max
Glyma.13G281200 1.0kb downstream 1.0kb downstream 2579 true Chr13: 38269640-38272218 Glycine max
Glyma.13G281200 1.0kb downstream 1.0kb downstream 1000 false Chr13: 38271219-38272218 Glycine max
Glyma.13G281200 2.0kb upstream 2.0kb upstream 3579 true Chr13: 38267640-38271218 Glycine max
Glyma.13G281200 2.0kb upstream 2.0kb upstream 2000 false Chr13: 38267640-38269639 Glycine max
Glyma.13G281200 2.0kb downstream 2.0kb downstream 3579 true Chr13: 38269640-38273218 Glycine max
Glyma.13G281200 2.0kb downstream 2.0kb downstream 2000 false Chr13: 38271219-38273218 Glycine max
Glyma.13G281200 5.0kb upstream 5.0kb upstream 6579 true Chr13: 38264640-38271218 Glycine max
Glyma.13G281200 5.0kb upstream 5.0kb upstream 5000 false Chr13: 38264640-38269639 Glycine max
Glyma.13G281200 5.0kb downstream 5.0kb downstream 6579 true Chr13: 38269640-38276218 Glycine max
Glyma.13G281200 5.0kb downstream 5.0kb downstream 5000 false Chr13: 38271219-38276218 Glycine max
Glyma.13G281200 10.0kb upstream 10.0kb upstream 11579 true Chr13: 38259640-38271218 Glycine max
Glyma.13G281200 10.0kb upstream 10.0kb upstream 10000 false Chr13: 38259640-38269639 Glycine max
Glyma.13G281200 10.0kb downstream 10.0kb downstream 11579 true Chr13: 38269640-38281218 Glycine max
Glyma.13G281200 10.0kb downstream 10.0kb downstream 10000 false Chr13: 38271219-38281218 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312535 5265 Fabidae View MSA
124073376 5270 Rosid View MSA
123752203 5271 Pentapetalae View MSA
122797654 5272 Eudicot View MSA
122050447 5273 Angiosperm View MSA
121349873 5274 Embryophyte View MSA
123381481 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 29.0461 0.0 77.6835 High  
cufflinks 37.5816 0.0 101.471 High  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 4.67584 0.0 14.1211   Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.201        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.567       High
cufflinks 5.222       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.075        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.073        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.082        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.049     Low  

0 Strain