Gene : Glyma.13G287400 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2874
Name:  ? Glyma.13G287400 Secondary Identifier:  ? PAC:30501264
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G287400 0.5kb upstream 0.5kb upstream 7985 true Chr13: 38779461-38787445 Glycine max
Glyma.13G287400 0.5kb upstream 0.5kb upstream 500 false Chr13: 38786946-38787445 Glycine max
Glyma.13G287400 0.5kb downstream 0.5kb downstream 7985 true Chr13: 38778961-38786945 Glycine max
Glyma.13G287400 0.5kb downstream 0.5kb downstream 500 false Chr13: 38778961-38779460 Glycine max
Glyma.13G287400 1.0kb upstream 1.0kb upstream 8485 true Chr13: 38779461-38787945 Glycine max
Glyma.13G287400 1.0kb upstream 1.0kb upstream 1000 false Chr13: 38786946-38787945 Glycine max
Glyma.13G287400 1.0kb downstream 1.0kb downstream 8485 true Chr13: 38778461-38786945 Glycine max
Glyma.13G287400 1.0kb downstream 1.0kb downstream 1000 false Chr13: 38778461-38779460 Glycine max
Glyma.13G287400 2.0kb upstream 2.0kb upstream 9485 true Chr13: 38779461-38788945 Glycine max
Glyma.13G287400 2.0kb upstream 2.0kb upstream 2000 false Chr13: 38786946-38788945 Glycine max
Glyma.13G287400 2.0kb downstream 2.0kb downstream 9485 true Chr13: 38777461-38786945 Glycine max
Glyma.13G287400 2.0kb downstream 2.0kb downstream 2000 false Chr13: 38777461-38779460 Glycine max
Glyma.13G287400 5.0kb upstream 5.0kb upstream 12485 true Chr13: 38779461-38791945 Glycine max
Glyma.13G287400 5.0kb upstream 5.0kb upstream 5000 false Chr13: 38786946-38791945 Glycine max
Glyma.13G287400 5.0kb downstream 5.0kb downstream 12485 true Chr13: 38774461-38786945 Glycine max
Glyma.13G287400 5.0kb downstream 5.0kb downstream 5000 false Chr13: 38774461-38779460 Glycine max
Glyma.13G287400 10.0kb upstream 10.0kb upstream 17485 true Chr13: 38779461-38796945 Glycine max
Glyma.13G287400 10.0kb upstream 10.0kb upstream 10000 false Chr13: 38786946-38796945 Glycine max
Glyma.13G287400 10.0kb downstream 10.0kb downstream 17485 true Chr13: 38769461-38786945 Glycine max
Glyma.13G287400 10.0kb downstream 10.0kb downstream 10000 false Chr13: 38769461-38779460 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306882 5265 Fabidae View MSA
124071393 5270 Rosid View MSA
123738469 5271 Pentapetalae View MSA
122788721 5272 Eudicot View MSA
122045808 5273 Angiosperm View MSA
121347981 5274 Embryophyte View MSA
123380700 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.783397 0.0 2.84011   High
cufflinks 0.478335 0.0 1.77888    
cufflinks 0.374086 0.0 1.40503    
cufflinks 0.253338 0.0 0.969536    
cufflinks 0.223643 0.0 0.862232 Low  
cufflinks 0.303898 0.0 1.15495    
cufflinks 0.258127 0.0 0.989402    
cufflinks 0.225133 0.0 0.866223 Low  
cufflinks 0.242559 0.0 0.930627 Low  
cufflinks 0.108        
cufflinks 0.103        
cufflinks 0.14        
cufflinks 0.149        
cufflinks 0.217        
cufflinks 0.095        
cufflinks 0.25       High
cufflinks 0.066     Low Low
cufflinks 0.216        
cufflinks 0.157        
cufflinks 0.247       High
cufflinks 0.083       Low
cufflinks 0.254       High
cufflinks 0.221        
cufflinks 0.08       Low
cufflinks 0.218        
cufflinks 0.09       Low

0 Strain