Gene : Glyma.13G262500 G. max Wm82.a2.v1
Defline:  (1 of 12) 5.5.1.6 - Chalcone isomerase / Chalcone--flavanone isomerase Genomic Order:  2625
Name:  ? Glyma.13G262500 Secondary Identifier:  ? PAC:30503437
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY1F-FLAVSYN Glycine max pathologic  
Gmax PWY-2002 Glycine max pathologic  
Gmax PWY-5059 Glycine max pathologic  
Gmax PWY-6325 Glycine max pathologic  
Gmax PWY-6787 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G262500 0.5kb upstream 0.5kb upstream 5181 true Chr13: 36603343-36608523 Glycine max
Glyma.13G262500 0.5kb upstream 0.5kb upstream 500 false Chr13: 36603343-36603842 Glycine max
Glyma.13G262500 0.5kb downstream 0.5kb downstream 5181 true Chr13: 36603843-36609023 Glycine max
Glyma.13G262500 0.5kb downstream 0.5kb downstream 500 false Chr13: 36608524-36609023 Glycine max
Glyma.13G262500 1.0kb upstream 1.0kb upstream 5681 true Chr13: 36602843-36608523 Glycine max
Glyma.13G262500 1.0kb upstream 1.0kb upstream 1000 false Chr13: 36602843-36603842 Glycine max
Glyma.13G262500 1.0kb downstream 1.0kb downstream 5681 true Chr13: 36603843-36609523 Glycine max
Glyma.13G262500 1.0kb downstream 1.0kb downstream 1000 false Chr13: 36608524-36609523 Glycine max
Glyma.13G262500 2.0kb upstream 2.0kb upstream 6681 true Chr13: 36601843-36608523 Glycine max
Glyma.13G262500 2.0kb upstream 2.0kb upstream 2000 false Chr13: 36601843-36603842 Glycine max
Glyma.13G262500 2.0kb downstream 2.0kb downstream 6681 true Chr13: 36603843-36610523 Glycine max
Glyma.13G262500 2.0kb downstream 2.0kb downstream 2000 false Chr13: 36608524-36610523 Glycine max
Glyma.13G262500 5.0kb upstream 5.0kb upstream 9681 true Chr13: 36598843-36608523 Glycine max
Glyma.13G262500 5.0kb upstream 5.0kb upstream 5000 false Chr13: 36598843-36603842 Glycine max
Glyma.13G262500 5.0kb downstream 5.0kb downstream 9681 true Chr13: 36603843-36613523 Glycine max
Glyma.13G262500 5.0kb downstream 5.0kb downstream 5000 false Chr13: 36608524-36613523 Glycine max
Glyma.13G262500 10.0kb upstream 10.0kb upstream 14681 true Chr13: 36593843-36608523 Glycine max
Glyma.13G262500 10.0kb upstream 10.0kb upstream 10000 false Chr13: 36593843-36603842 Glycine max
Glyma.13G262500 10.0kb downstream 10.0kb downstream 14681 true Chr13: 36603843-36618523 Glycine max
Glyma.13G262500 10.0kb downstream 10.0kb downstream 10000 false Chr13: 36608524-36618523 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306003 5265 Fabidae View MSA
124063090 5270 Rosid View MSA
123738535 5271 Pentapetalae View MSA
122786732 5272 Eudicot View MSA
122050313 5273 Angiosperm View MSA
121351129 5274 Embryophyte View MSA
123427502 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.05746 0.0 6.8206    
cufflinks 14.1498 0.0 37.9273   High
cufflinks 1.45975 0.0 5.01018   Low
cufflinks 4.37943 0.0 13.0074    
cufflinks 3.67689 0.0 11.2447    
cufflinks 2.31039 0.0 7.52261    
cufflinks 17.5333 0.0 46.8168   High
cufflinks 2.72441 0.0 8.65151    
cufflinks 2.18442 0.0 7.15919    
cufflinks 3.299        
cufflinks 0.044     Low Low
cufflinks 1.596        
cufflinks 0.992        
cufflinks 1.776        
cufflinks 0.051     Low Low
cufflinks 4.695        
cufflinks 0.252        
cufflinks 2.683        
cufflinks 5.099        
cufflinks 3.479        
cufflinks 0.052     Low Low
cufflinks 3.742        
cufflinks 6.512       High
cufflinks 0.04     Low Low
cufflinks 4.215        
cufflinks 0.181        

0 Strain