Gene : Glyma.13G315200 G. max Wm82.a2.v1
Defline:  (1 of 5) 5.3.99.9 - Neoxanthin synthase / NSY Genomic Order:  3152
Name:  ? Glyma.13G315200 Secondary Identifier:  ? PAC:30504728
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6809 Glycine max pathologic  
Gmax PWY-695 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G315200 0.5kb upstream 0.5kb upstream 2445 true Chr13: 41035905-41038349 Glycine max
Glyma.13G315200 0.5kb upstream 0.5kb upstream 500 false Chr13: 41037850-41038349 Glycine max
Glyma.13G315200 0.5kb downstream 0.5kb downstream 2445 true Chr13: 41035405-41037849 Glycine max
Glyma.13G315200 0.5kb downstream 0.5kb downstream 500 false Chr13: 41035405-41035904 Glycine max
Glyma.13G315200 1.0kb upstream 1.0kb upstream 2945 true Chr13: 41035905-41038849 Glycine max
Glyma.13G315200 1.0kb upstream 1.0kb upstream 1000 false Chr13: 41037850-41038849 Glycine max
Glyma.13G315200 1.0kb downstream 1.0kb downstream 2945 true Chr13: 41034905-41037849 Glycine max
Glyma.13G315200 1.0kb downstream 1.0kb downstream 1000 false Chr13: 41034905-41035904 Glycine max
Glyma.13G315200 2.0kb upstream 2.0kb upstream 3945 true Chr13: 41035905-41039849 Glycine max
Glyma.13G315200 2.0kb upstream 2.0kb upstream 2000 false Chr13: 41037850-41039849 Glycine max
Glyma.13G315200 2.0kb downstream 2.0kb downstream 3945 true Chr13: 41033905-41037849 Glycine max
Glyma.13G315200 2.0kb downstream 2.0kb downstream 2000 false Chr13: 41033905-41035904 Glycine max
Glyma.13G315200 5.0kb upstream 5.0kb upstream 6945 true Chr13: 41035905-41042849 Glycine max
Glyma.13G315200 5.0kb upstream 5.0kb upstream 5000 false Chr13: 41037850-41042849 Glycine max
Glyma.13G315200 5.0kb downstream 5.0kb downstream 6945 true Chr13: 41030905-41037849 Glycine max
Glyma.13G315200 5.0kb downstream 5.0kb downstream 5000 false Chr13: 41030905-41035904 Glycine max
Glyma.13G315200 10.0kb upstream 10.0kb upstream 11945 true Chr13: 41035905-41047849 Glycine max
Glyma.13G315200 10.0kb upstream 10.0kb upstream 10000 false Chr13: 41037850-41047849 Glycine max
Glyma.13G315200 10.0kb downstream 10.0kb downstream 11945 true Chr13: 41025905-41037849 Glycine max
Glyma.13G315200 10.0kb downstream 10.0kb downstream 10000 false Chr13: 41025905-41035904 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308924 5265 Fabidae View MSA
124070716 5270 Rosid View MSA
123749598 5271 Pentapetalae View MSA
122795342 5272 Eudicot View MSA
122048987 5273 Angiosperm View MSA
121311196 5274 Embryophyte View MSA
123348524 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.7143 0.0 11.0218    
cufflinks 0.30786 0.0 1.15809   Low
cufflinks 18.3042 0.0 48.8948   High
cufflinks 1.54525 0.0 5.17137    
cufflinks 3.92612 0.0 11.5758    
cufflinks 13.5487 0.0 36.1959   High
cufflinks 1.25782 0.0 4.31117    
cufflinks 2.06584 0.0 6.63861    
cufflinks 4.02724 0.0 11.8007    
cufflinks 0.183       Low
cufflinks 0.61        
cufflinks 33.382     High High
cufflinks 3.408        
cufflinks 0.972        
cufflinks 0.338        
cufflinks 0.368        
cufflinks 4.256       High
cufflinks 4.753       High
cufflinks 0.492        
cufflinks 0.391        
cufflinks 0.974        
cufflinks 0.682        
cufflinks 1.668        
cufflinks 1.66        
cufflinks 0.273       Low
cufflinks 1.045        

0 Strain