Gene : Glyma.13G319000 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR21022//PTHR21022:SF5 - PREPHENATE DEHYDRATASE P PROTEIN Genomic Order:  3190
Name:  ? Glyma.13G319000 Secondary Identifier:  ? PAC:30505762
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-3462 Glycine max pathologic  
Gmax PWY-3481 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G319000 0.5kb upstream 0.5kb upstream 2508 true Chr13: 41356876-41359383 Glycine max
Glyma.13G319000 0.5kb upstream 0.5kb upstream 500 false Chr13: 41356876-41357375 Glycine max
Glyma.13G319000 0.5kb downstream 0.5kb downstream 2508 true Chr13: 41357376-41359883 Glycine max
Glyma.13G319000 0.5kb downstream 0.5kb downstream 500 false Chr13: 41359384-41359883 Glycine max
Glyma.13G319000 1.0kb upstream 1.0kb upstream 3008 true Chr13: 41356376-41359383 Glycine max
Glyma.13G319000 1.0kb upstream 1.0kb upstream 1000 false Chr13: 41356376-41357375 Glycine max
Glyma.13G319000 1.0kb downstream 1.0kb downstream 3008 true Chr13: 41357376-41360383 Glycine max
Glyma.13G319000 1.0kb downstream 1.0kb downstream 1000 false Chr13: 41359384-41360383 Glycine max
Glyma.13G319000 2.0kb upstream 2.0kb upstream 4008 true Chr13: 41355376-41359383 Glycine max
Glyma.13G319000 2.0kb upstream 2.0kb upstream 2000 false Chr13: 41355376-41357375 Glycine max
Glyma.13G319000 2.0kb downstream 2.0kb downstream 4008 true Chr13: 41357376-41361383 Glycine max
Glyma.13G319000 2.0kb downstream 2.0kb downstream 2000 false Chr13: 41359384-41361383 Glycine max
Glyma.13G319000 5.0kb upstream 5.0kb upstream 7008 true Chr13: 41352376-41359383 Glycine max
Glyma.13G319000 5.0kb upstream 5.0kb upstream 5000 false Chr13: 41352376-41357375 Glycine max
Glyma.13G319000 5.0kb downstream 5.0kb downstream 7008 true Chr13: 41357376-41364383 Glycine max
Glyma.13G319000 5.0kb downstream 5.0kb downstream 5000 false Chr13: 41359384-41364383 Glycine max
Glyma.13G319000 10.0kb upstream 10.0kb upstream 12008 true Chr13: 41347376-41359383 Glycine max
Glyma.13G319000 10.0kb upstream 10.0kb upstream 10000 false Chr13: 41347376-41357375 Glycine max
Glyma.13G319000 10.0kb downstream 10.0kb downstream 12008 true Chr13: 41357376-41369383 Glycine max
Glyma.13G319000 10.0kb downstream 10.0kb downstream 10000 false Chr13: 41359384-41369383 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122245733 5265 Fabidae Singleton cluster - no MSA
124066223 5270 Rosid View MSA
123745222 5271 Pentapetalae View MSA
122787752 5272 Eudicot View MSA
122046279 5273 Angiosperm View MSA
121351398 5274 Embryophyte View MSA
123427097 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.8817 0.0 61.3221 High  
cufflinks 17.6319 0.0 47.04    
cufflinks 17.7763 0.0 47.4427    
cufflinks 14.0371 0.0 37.5567    
cufflinks 14.4904 0.0 38.6752    
cufflinks 17.4584 0.0 46.5803    
cufflinks 5.26506 0.0 15.0086   Low
cufflinks 24.7323 0.0 66.3685 High High
cufflinks 14.272 0.0 38.1347    
cufflinks 20.851     High High
cufflinks 3.126       Low
cufflinks 11.141     High  
cufflinks 10.341     High  
cufflinks 5.48        
cufflinks 2.257       Low
cufflinks 7.136        
cufflinks 31.497     High High
cufflinks 8.78     High  
cufflinks 11.338     High  
cufflinks 3.839        
cufflinks 2.581       Low
cufflinks 6.242        
cufflinks 12.876     High  
cufflinks 6.82     High  
cufflinks 3.733        
cufflinks 6.588     High  

0 Strain