Gene : Glyma.13G310600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12416:SF2 - RRNA-PROCESSING PROTEIN FCF1 HOMOLOG Genomic Order:  3106
Name:  ? Glyma.13G310600 Secondary Identifier:  ? PAC:30500552
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G310600 0.5kb upstream 0.5kb upstream 5365 true Chr13: 40603354-40608718 Glycine max
Glyma.13G310600 0.5kb upstream 0.5kb upstream 500 false Chr13: 40608219-40608718 Glycine max
Glyma.13G310600 0.5kb downstream 0.5kb downstream 5365 true Chr13: 40602854-40608218 Glycine max
Glyma.13G310600 0.5kb downstream 0.5kb downstream 500 false Chr13: 40602854-40603353 Glycine max
Glyma.13G310600 1.0kb upstream 1.0kb upstream 5865 true Chr13: 40603354-40609218 Glycine max
Glyma.13G310600 1.0kb upstream 1.0kb upstream 1000 false Chr13: 40608219-40609218 Glycine max
Glyma.13G310600 1.0kb downstream 1.0kb downstream 5865 true Chr13: 40602354-40608218 Glycine max
Glyma.13G310600 1.0kb downstream 1.0kb downstream 1000 false Chr13: 40602354-40603353 Glycine max
Glyma.13G310600 2.0kb upstream 2.0kb upstream 6865 true Chr13: 40603354-40610218 Glycine max
Glyma.13G310600 2.0kb upstream 2.0kb upstream 2000 false Chr13: 40608219-40610218 Glycine max
Glyma.13G310600 2.0kb downstream 2.0kb downstream 6865 true Chr13: 40601354-40608218 Glycine max
Glyma.13G310600 2.0kb downstream 2.0kb downstream 2000 false Chr13: 40601354-40603353 Glycine max
Glyma.13G310600 5.0kb upstream 5.0kb upstream 9865 true Chr13: 40603354-40613218 Glycine max
Glyma.13G310600 5.0kb upstream 5.0kb upstream 5000 false Chr13: 40608219-40613218 Glycine max
Glyma.13G310600 5.0kb downstream 5.0kb downstream 9865 true Chr13: 40598354-40608218 Glycine max
Glyma.13G310600 5.0kb downstream 5.0kb downstream 5000 false Chr13: 40598354-40603353 Glycine max
Glyma.13G310600 10.0kb upstream 10.0kb upstream 14865 true Chr13: 40603354-40618218 Glycine max
Glyma.13G310600 10.0kb upstream 10.0kb upstream 10000 false Chr13: 40608219-40618218 Glycine max
Glyma.13G310600 10.0kb downstream 10.0kb downstream 14865 true Chr13: 40593354-40608218 Glycine max
Glyma.13G310600 10.0kb downstream 10.0kb downstream 10000 false Chr13: 40593354-40603353 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300210 5265 Fabidae View MSA
124074295 5270 Rosid View MSA
123738427 5271 Pentapetalae View MSA
122793341 5272 Eudicot View MSA
122042240 5273 Angiosperm View MSA
121350234 5274 Embryophyte View MSA
123426184 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.9374 0.0 47.8575   High
cufflinks 10.0914 0.0 36.3257   Low
cufflinks 9.4216 0.0 38.0833   Low
cufflinks 11.3655 0.0 44.7761    
cufflinks 13.1517 0.0 51.6285    
cufflinks 11.4311 0.0 44.9629    
cufflinks 14.8506 0.0 51.2538   High
cufflinks 10.6099 0.0 42.4657    
cufflinks 12.6597 0.0 49.5047    
cufflinks 0.668       Low
cufflinks 1.363        
cufflinks 0.932        
cufflinks 1.292        
cufflinks 1.546       High
cufflinks 1.709       High
cufflinks 0.706       Low
cufflinks 0.785        
cufflinks 0.907        
cufflinks 0.973        
cufflinks 0.747        
cufflinks 1.518       High
cufflinks 0.703       Low
cufflinks 1.009        
cufflinks 1.27        
cufflinks 0.739        
cufflinks 1.023        

0 Strain