Gene : Glyma.13G297800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR24015:SF644 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Genomic Order:  2978
Name:  ? Glyma.13G297800 Secondary Identifier:  ? PAC:30503985
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G297800 0.5kb upstream 0.5kb upstream 2780 true Chr13: 39650874-39653653 Glycine max
Glyma.13G297800 0.5kb upstream 0.5kb upstream 500 false Chr13: 39653154-39653653 Glycine max
Glyma.13G297800 0.5kb downstream 0.5kb downstream 2780 true Chr13: 39650374-39653153 Glycine max
Glyma.13G297800 0.5kb downstream 0.5kb downstream 500 false Chr13: 39650374-39650873 Glycine max
Glyma.13G297800 1.0kb upstream 1.0kb upstream 3280 true Chr13: 39650874-39654153 Glycine max
Glyma.13G297800 1.0kb upstream 1.0kb upstream 1000 false Chr13: 39653154-39654153 Glycine max
Glyma.13G297800 1.0kb downstream 1.0kb downstream 3280 true Chr13: 39649874-39653153 Glycine max
Glyma.13G297800 1.0kb downstream 1.0kb downstream 1000 false Chr13: 39649874-39650873 Glycine max
Glyma.13G297800 2.0kb upstream 2.0kb upstream 4280 true Chr13: 39650874-39655153 Glycine max
Glyma.13G297800 2.0kb upstream 2.0kb upstream 2000 false Chr13: 39653154-39655153 Glycine max
Glyma.13G297800 2.0kb downstream 2.0kb downstream 4280 true Chr13: 39648874-39653153 Glycine max
Glyma.13G297800 2.0kb downstream 2.0kb downstream 2000 false Chr13: 39648874-39650873 Glycine max
Glyma.13G297800 5.0kb upstream 5.0kb upstream 7280 true Chr13: 39650874-39658153 Glycine max
Glyma.13G297800 5.0kb upstream 5.0kb upstream 5000 false Chr13: 39653154-39658153 Glycine max
Glyma.13G297800 5.0kb downstream 5.0kb downstream 7280 true Chr13: 39645874-39653153 Glycine max
Glyma.13G297800 5.0kb downstream 5.0kb downstream 5000 false Chr13: 39645874-39650873 Glycine max
Glyma.13G297800 10.0kb upstream 10.0kb upstream 12280 true Chr13: 39650874-39663153 Glycine max
Glyma.13G297800 10.0kb upstream 10.0kb upstream 10000 false Chr13: 39653154-39663153 Glycine max
Glyma.13G297800 10.0kb downstream 10.0kb downstream 12280 true Chr13: 39640874-39653153 Glycine max
Glyma.13G297800 10.0kb downstream 10.0kb downstream 10000 false Chr13: 39640874-39650873 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313688 5265 Fabidae View MSA
124071698 5270 Rosid View MSA
123743334 5271 Pentapetalae View MSA
122796848 5272 Eudicot View MSA
122049142 5273 Angiosperm View MSA
121311265 5274 Embryophyte View MSA
123348580 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.60028 0.0 2.21195    
cufflinks 1.97075 0.0 6.60088   High
cufflinks 0.462967 0.0 1.72462   Low
cufflinks 1.35646 0.0 4.71922    
cufflinks 0.910799 0.0 3.27283    
cufflinks 0.337206 0.0 1.27705   Low
cufflinks 1.62844 0.0 5.58473    
cufflinks 1.09783 0.0 3.88979    
cufflinks 1.07339 0.0 3.81222    
cufflinks 0.764        
cufflinks 0.162       Low
cufflinks 2.135        
cufflinks 1.598        
cufflinks 1.955        
cufflinks 1.071        
cufflinks 2.268        
cufflinks 0.116       Low
cufflinks 2.962        
cufflinks 3.382        
cufflinks 2.315        
cufflinks 0.207       Low
cufflinks 2.35        
cufflinks 2.809        
cufflinks 0.107       Low
cufflinks 2.892        
cufflinks 0.208       Low

0 Strain