Gene : Glyma.13G336000 G. max Wm82.a2.v1
Defline:  (1 of 16) PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  3360
Name:  ? Glyma.13G336000 Secondary Identifier:  ? PAC:30502468
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G336000 0.5kb upstream 0.5kb upstream 2346 true Chr13: 42936871-42939216 Glycine max
Glyma.13G336000 0.5kb upstream 0.5kb upstream 500 false Chr13: 42936871-42937370 Glycine max
Glyma.13G336000 0.5kb downstream 0.5kb downstream 2346 true Chr13: 42937371-42939716 Glycine max
Glyma.13G336000 0.5kb downstream 0.5kb downstream 500 false Chr13: 42939217-42939716 Glycine max
Glyma.13G336000 1.0kb upstream 1.0kb upstream 2846 true Chr13: 42936371-42939216 Glycine max
Glyma.13G336000 1.0kb upstream 1.0kb upstream 1000 false Chr13: 42936371-42937370 Glycine max
Glyma.13G336000 1.0kb downstream 1.0kb downstream 2846 true Chr13: 42937371-42940216 Glycine max
Glyma.13G336000 1.0kb downstream 1.0kb downstream 1000 false Chr13: 42939217-42940216 Glycine max
Glyma.13G336000 2.0kb upstream 2.0kb upstream 3846 true Chr13: 42935371-42939216 Glycine max
Glyma.13G336000 2.0kb upstream 2.0kb upstream 2000 false Chr13: 42935371-42937370 Glycine max
Glyma.13G336000 2.0kb downstream 2.0kb downstream 3846 true Chr13: 42937371-42941216 Glycine max
Glyma.13G336000 2.0kb downstream 2.0kb downstream 2000 false Chr13: 42939217-42941216 Glycine max
Glyma.13G336000 5.0kb upstream 5.0kb upstream 6846 true Chr13: 42932371-42939216 Glycine max
Glyma.13G336000 5.0kb upstream 5.0kb upstream 5000 false Chr13: 42932371-42937370 Glycine max
Glyma.13G336000 5.0kb downstream 5.0kb downstream 6846 true Chr13: 42937371-42944216 Glycine max
Glyma.13G336000 5.0kb downstream 5.0kb downstream 5000 false Chr13: 42939217-42944216 Glycine max
Glyma.13G336000 10.0kb upstream 10.0kb upstream 11846 true Chr13: 42927371-42939216 Glycine max
Glyma.13G336000 10.0kb upstream 10.0kb upstream 10000 false Chr13: 42927371-42937370 Glycine max
Glyma.13G336000 10.0kb downstream 10.0kb downstream 11846 true Chr13: 42937371-42949216 Glycine max
Glyma.13G336000 10.0kb downstream 10.0kb downstream 10000 false Chr13: 42939217-42949216 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305758 5265 Fabidae View MSA
124062524 5270 Rosid View MSA
123736942 5271 Pentapetalae View MSA
122790560 5272 Eudicot View MSA
122046804 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.40449 0.0 1.5149   High
cufflinks 0.328362 0.0 1.24126    
cufflinks 0.159155 0.0 0.619915 Low Low
cufflinks 0.226312 0.0 0.868893    
cufflinks 0.307979 0.0 1.16735    
cufflinks 0.120449 0.0 0.47458 Low Low
cufflinks 0.248982 0.0 0.952406    
cufflinks 0.203418 0.0 0.784796 Low  
cufflinks 0.327458 0.0 1.23763    
cufflinks 0.073     Low Low
cufflinks 0.132        
cufflinks 0.126        
cufflinks 0.323       High
cufflinks 0.478       High
cufflinks 0.106        
cufflinks 0.074     Low Low
cufflinks 0.146        
cufflinks 0.161        
cufflinks 0.254       High
cufflinks 0.069     Low Low
cufflinks 0.152        
cufflinks 0.114        
cufflinks 0.167        
cufflinks 0.194        
cufflinks 0.128        
cufflinks 0.107        

0 Strain