Gene : Glyma.13G330800 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11177//PTHR11177:SF186 - CHITINASE Genomic Order:  3308
Name:  ? Glyma.13G330800 Secondary Identifier:  ? PAC:30505661
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6902 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G330800 0.5kb upstream 0.5kb upstream 2065 true Chr13: 42537670-42539734 Glycine max
Glyma.13G330800 0.5kb upstream 0.5kb upstream 500 false Chr13: 42537670-42538169 Glycine max
Glyma.13G330800 0.5kb downstream 0.5kb downstream 2065 true Chr13: 42538170-42540234 Glycine max
Glyma.13G330800 0.5kb downstream 0.5kb downstream 500 false Chr13: 42539735-42540234 Glycine max
Glyma.13G330800 1.0kb upstream 1.0kb upstream 2565 true Chr13: 42537170-42539734 Glycine max
Glyma.13G330800 1.0kb upstream 1.0kb upstream 1000 false Chr13: 42537170-42538169 Glycine max
Glyma.13G330800 1.0kb downstream 1.0kb downstream 2565 true Chr13: 42538170-42540734 Glycine max
Glyma.13G330800 1.0kb downstream 1.0kb downstream 1000 false Chr13: 42539735-42540734 Glycine max
Glyma.13G330800 2.0kb upstream 2.0kb upstream 3565 true Chr13: 42536170-42539734 Glycine max
Glyma.13G330800 2.0kb upstream 2.0kb upstream 2000 false Chr13: 42536170-42538169 Glycine max
Glyma.13G330800 2.0kb downstream 2.0kb downstream 3565 true Chr13: 42538170-42541734 Glycine max
Glyma.13G330800 2.0kb downstream 2.0kb downstream 2000 false Chr13: 42539735-42541734 Glycine max
Glyma.13G330800 5.0kb upstream 5.0kb upstream 6565 true Chr13: 42533170-42539734 Glycine max
Glyma.13G330800 5.0kb upstream 5.0kb upstream 5000 false Chr13: 42533170-42538169 Glycine max
Glyma.13G330800 5.0kb downstream 5.0kb downstream 6565 true Chr13: 42538170-42544734 Glycine max
Glyma.13G330800 5.0kb downstream 5.0kb downstream 5000 false Chr13: 42539735-42544734 Glycine max
Glyma.13G330800 10.0kb upstream 10.0kb upstream 11565 true Chr13: 42528170-42539734 Glycine max
Glyma.13G330800 10.0kb upstream 10.0kb upstream 10000 false Chr13: 42528170-42538169 Glycine max
Glyma.13G330800 10.0kb downstream 10.0kb downstream 11565 true Chr13: 42538170-42549734 Glycine max
Glyma.13G330800 10.0kb downstream 10.0kb downstream 10000 false Chr13: 42539735-42549734 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122245741 5265 Fabidae Singleton cluster - no MSA
124042172 5270 Rosid View MSA
123612613 5271 Pentapetalae View MSA
122647107 5272 Eudicot View MSA
122049953 5273 Angiosperm View MSA
121348698 5274 Embryophyte View MSA
123380978 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.24577 0.0 15.683    
cufflinks 2.66303 0.0 8.71954    
cufflinks 23.0341 0.0 61.452 High High
cufflinks 2.03126 0.0 6.88757    
cufflinks 0.547109 0.0 2.04279    
cufflinks 1.88307 0.0 6.44358    
cufflinks 0.0145472 0.0 0.0666293 Low Low
cufflinks 2.55966 0.0 8.42414    
cufflinks 0.715819 0.0 2.63137    
cufflinks 8.14     High High
cufflinks 0.255       Low
cufflinks 16.787     High High
cufflinks 2.148        
cufflinks 0.439       Low
cufflinks 0.108       Low
cufflinks 1.751        
cufflinks 3.006        
cufflinks 9.111     High High
cufflinks 4.438        
cufflinks 0.666        
cufflinks 0.436       Low
cufflinks 4.073        
cufflinks 13.408     High High
cufflinks 1.156        
cufflinks 1.146        
cufflinks 3.844        

0 Strain