Gene : Glyma.13G360800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11370 - DNA-REPAIR PROTEIN XRCC1 Genomic Order:  3608
Name:  ? Glyma.13G360800 Secondary Identifier:  ? PAC:30500843
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G360800 0.5kb upstream 0.5kb upstream 4600 true Chr13: 44779016-44783615 Glycine max
Glyma.13G360800 0.5kb upstream 0.5kb upstream 500 false Chr13: 44779016-44779515 Glycine max
Glyma.13G360800 0.5kb downstream 0.5kb downstream 4600 true Chr13: 44779516-44784115 Glycine max
Glyma.13G360800 0.5kb downstream 0.5kb downstream 500 false Chr13: 44783616-44784115 Glycine max
Glyma.13G360800 1.0kb upstream 1.0kb upstream 5100 true Chr13: 44778516-44783615 Glycine max
Glyma.13G360800 1.0kb upstream 1.0kb upstream 1000 false Chr13: 44778516-44779515 Glycine max
Glyma.13G360800 1.0kb downstream 1.0kb downstream 5100 true Chr13: 44779516-44784615 Glycine max
Glyma.13G360800 1.0kb downstream 1.0kb downstream 1000 false Chr13: 44783616-44784615 Glycine max
Glyma.13G360800 2.0kb upstream 2.0kb upstream 6100 true Chr13: 44777516-44783615 Glycine max
Glyma.13G360800 2.0kb upstream 2.0kb upstream 2000 false Chr13: 44777516-44779515 Glycine max
Glyma.13G360800 2.0kb downstream 2.0kb downstream 6100 true Chr13: 44779516-44785615 Glycine max
Glyma.13G360800 2.0kb downstream 2.0kb downstream 2000 false Chr13: 44783616-44785615 Glycine max
Glyma.13G360800 5.0kb upstream 5.0kb upstream 9100 true Chr13: 44774516-44783615 Glycine max
Glyma.13G360800 5.0kb upstream 5.0kb upstream 5000 false Chr13: 44774516-44779515 Glycine max
Glyma.13G360800 5.0kb downstream 5.0kb downstream 9100 true Chr13: 44779516-44788615 Glycine max
Glyma.13G360800 5.0kb downstream 5.0kb downstream 5000 false Chr13: 44783616-44788615 Glycine max
Glyma.13G360800 10.0kb upstream 10.0kb upstream 14100 true Chr13: 44769516-44783615 Glycine max
Glyma.13G360800 10.0kb upstream 10.0kb upstream 10000 false Chr13: 44769516-44779515 Glycine max
Glyma.13G360800 10.0kb downstream 10.0kb downstream 14100 true Chr13: 44779516-44793615 Glycine max
Glyma.13G360800 10.0kb downstream 10.0kb downstream 10000 false Chr13: 44783616-44793615 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302854 5265 Fabidae View MSA
124064277 5270 Rosid View MSA
123745081 5271 Pentapetalae View MSA
122790473 5272 Eudicot View MSA
122046298 5273 Angiosperm View MSA
121347821 5274 Embryophyte View MSA
123380641 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.57991 0.0 18.1342    
cufflinks 6.05538 0.0 26.0312   High
cufflinks 3.2684 0.0 16.8562    
cufflinks 5.08072 0.0 20.2453    
cufflinks 2.98009 0.0 16.1031    
cufflinks 1.70007 0.0 8.21288   Low
cufflinks 5.75793 0.0 22.4046   High
cufflinks 3.5145 0.0 17.7265    
cufflinks 3.98485 0.0 19.7394    
cufflinks 0.428        
cufflinks 0.287        
cufflinks 0.725        
cufflinks 0.376        
cufflinks 0.471        
cufflinks 0.465        
cufflinks 0.812        
cufflinks 0.14       Low
cufflinks 0.899        
cufflinks 0.879        
cufflinks 0.942       High
cufflinks 0.236       Low
cufflinks 0.967       High
cufflinks 0.702        
cufflinks 0.259        
cufflinks 0.994       High
cufflinks 0.183       Low

0 Strain