Gene : Glyma.13G352500 G. max Wm82.a2.v1
Defline:  (1 of 4) 2.1.1.190 - 23S rRNA (uracil(1939)-C(5))-methyltransferase / RNA uridine methyltransferase A Genomic Order:  3525
Name:  ? Glyma.13G352500 Secondary Identifier:  ? PAC:30500081
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G352500 0.5kb upstream 0.5kb upstream 5019 true Chr13: 44137137-44142155 Glycine max
Glyma.13G352500 0.5kb upstream 0.5kb upstream 500 false Chr13: 44137137-44137636 Glycine max
Glyma.13G352500 0.5kb downstream 0.5kb downstream 5019 true Chr13: 44137637-44142655 Glycine max
Glyma.13G352500 0.5kb downstream 0.5kb downstream 500 false Chr13: 44142156-44142655 Glycine max
Glyma.13G352500 1.0kb upstream 1.0kb upstream 5519 true Chr13: 44136637-44142155 Glycine max
Glyma.13G352500 1.0kb upstream 1.0kb upstream 1000 false Chr13: 44136637-44137636 Glycine max
Glyma.13G352500 1.0kb downstream 1.0kb downstream 5519 true Chr13: 44137637-44143155 Glycine max
Glyma.13G352500 1.0kb downstream 1.0kb downstream 1000 false Chr13: 44142156-44143155 Glycine max
Glyma.13G352500 2.0kb upstream 2.0kb upstream 6519 true Chr13: 44135637-44142155 Glycine max
Glyma.13G352500 2.0kb upstream 2.0kb upstream 2000 false Chr13: 44135637-44137636 Glycine max
Glyma.13G352500 2.0kb downstream 2.0kb downstream 6519 true Chr13: 44137637-44144155 Glycine max
Glyma.13G352500 2.0kb downstream 2.0kb downstream 2000 false Chr13: 44142156-44144155 Glycine max
Glyma.13G352500 5.0kb upstream 5.0kb upstream 9519 true Chr13: 44132637-44142155 Glycine max
Glyma.13G352500 5.0kb upstream 5.0kb upstream 5000 false Chr13: 44132637-44137636 Glycine max
Glyma.13G352500 5.0kb downstream 5.0kb downstream 9519 true Chr13: 44137637-44147155 Glycine max
Glyma.13G352500 5.0kb downstream 5.0kb downstream 5000 false Chr13: 44142156-44147155 Glycine max
Glyma.13G352500 10.0kb upstream 10.0kb upstream 14519 true Chr13: 44127637-44142155 Glycine max
Glyma.13G352500 10.0kb upstream 10.0kb upstream 10000 false Chr13: 44127637-44137636 Glycine max
Glyma.13G352500 10.0kb downstream 10.0kb downstream 14519 true Chr13: 44137637-44152155 Glycine max
Glyma.13G352500 10.0kb downstream 10.0kb downstream 10000 false Chr13: 44142156-44152155 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305203 5265 Fabidae View MSA
124060880 5270 Rosid View MSA
123737477 5271 Pentapetalae View MSA
122788250 5272 Eudicot View MSA
122042152 5273 Angiosperm View MSA
121345091 5274 Embryophyte View MSA
123424748 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.542 0.0 33.5355   High
cufflinks 7.78504 0.0 24.2328    
cufflinks 3.88057 0.0 13.8532    
cufflinks 5.7772 0.0 22.4641    
cufflinks 5.64069 0.0 18.5256    
cufflinks 2.27162 0.0 7.39632   Low
cufflinks 5.07825 0.0 20.0028    
cufflinks 6.13356 0.0 19.7961    
cufflinks 3.09361 0.0 11.8094   Low
cufflinks 1.146        
cufflinks 0.153       Low
cufflinks 1.378        
cufflinks 1.04        
cufflinks 1.468        
cufflinks 0.462        
cufflinks 4.257       High
cufflinks 0.357       Low
cufflinks 1.686        
cufflinks 2.417        
cufflinks 5.61       High
cufflinks 0.254       Low
cufflinks 4.522       High
cufflinks 3.497        
cufflinks 0.228       Low
cufflinks 5.141       High
cufflinks 0.489        

0 Strain