Gene : Glyma.13G343300 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR11685:SF135 - E3 UBIQUITIN-PROTEIN LIGASE ARI10-RELATED Genomic Order:  3433
Name:  ? Glyma.13G343300 Secondary Identifier:  ? PAC:30505972
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G343300 0.5kb upstream 0.5kb upstream 8235 true Chr13: 43466163-43474397 Glycine max
Glyma.13G343300 0.5kb upstream 0.5kb upstream 500 false Chr13: 43466163-43466662 Glycine max
Glyma.13G343300 0.5kb downstream 0.5kb downstream 8235 true Chr13: 43466663-43474897 Glycine max
Glyma.13G343300 0.5kb downstream 0.5kb downstream 500 false Chr13: 43474398-43474897 Glycine max
Glyma.13G343300 1.0kb upstream 1.0kb upstream 8735 true Chr13: 43465663-43474397 Glycine max
Glyma.13G343300 1.0kb upstream 1.0kb upstream 1000 false Chr13: 43465663-43466662 Glycine max
Glyma.13G343300 1.0kb downstream 1.0kb downstream 8735 true Chr13: 43466663-43475397 Glycine max
Glyma.13G343300 1.0kb downstream 1.0kb downstream 1000 false Chr13: 43474398-43475397 Glycine max
Glyma.13G343300 2.0kb upstream 2.0kb upstream 9735 true Chr13: 43464663-43474397 Glycine max
Glyma.13G343300 2.0kb upstream 2.0kb upstream 2000 false Chr13: 43464663-43466662 Glycine max
Glyma.13G343300 2.0kb downstream 2.0kb downstream 9735 true Chr13: 43466663-43476397 Glycine max
Glyma.13G343300 2.0kb downstream 2.0kb downstream 2000 false Chr13: 43474398-43476397 Glycine max
Glyma.13G343300 5.0kb upstream 5.0kb upstream 12735 true Chr13: 43461663-43474397 Glycine max
Glyma.13G343300 5.0kb upstream 5.0kb upstream 5000 false Chr13: 43461663-43466662 Glycine max
Glyma.13G343300 5.0kb downstream 5.0kb downstream 12735 true Chr13: 43466663-43479397 Glycine max
Glyma.13G343300 5.0kb downstream 5.0kb downstream 5000 false Chr13: 43474398-43479397 Glycine max
Glyma.13G343300 10.0kb upstream 10.0kb upstream 17735 true Chr13: 43456663-43474397 Glycine max
Glyma.13G343300 10.0kb upstream 10.0kb upstream 10000 false Chr13: 43456663-43466662 Glycine max
Glyma.13G343300 10.0kb downstream 10.0kb downstream 17735 true Chr13: 43466663-43484397 Glycine max
Glyma.13G343300 10.0kb downstream 10.0kb downstream 10000 false Chr13: 43474398-43484397 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314915 5265 Fabidae View MSA
124071269 5270 Rosid View MSA
123742457 5271 Pentapetalae View MSA
122787924 5272 Eudicot View MSA
122045508 5273 Angiosperm View MSA
121343931 5274 Embryophyte View MSA
123428000 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.8616 0.0 47.9134    
cufflinks 17.7888 0.0 47.6957    
cufflinks 31.6932 0.0 88.417 High High
cufflinks 18.7008 0.0 50.2547    
cufflinks 12.9539 0.0 34.5594   Low
cufflinks 16.8095 0.0 45.0132    
cufflinks 16.9919 0.0 45.4926    
cufflinks 20.9552 0.0 56.5942    
cufflinks 14.6643 0.0 39.1541    
cufflinks 4.15        
cufflinks 6.762     High High
cufflinks 6.877       High
cufflinks 4.141        
cufflinks 3.314       Low
cufflinks 3.693       Low
cufflinks 4.487        
cufflinks 3.96        
cufflinks 5.644        
cufflinks 5.708        
cufflinks 4.745        
cufflinks 6.066     High  
cufflinks 4.86        
cufflinks 4.275        
cufflinks 6.73     High High
cufflinks 4.838        
cufflinks 5.059        

0 Strain