Gene : Glyma.14G013000 G. max Wm82.a2.v1
Defline:  (1 of 25) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  130
Name:  ? Glyma.14G013000 Secondary Identifier:  ? PAC:30534013
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.14G013000 0.5kb upstream 0.5kb upstream 2156 true Chr14: 979943-982098 Glycine max
Glyma.14G013000 0.5kb upstream 0.5kb upstream 500 false Chr14: 981599-982098 Glycine max
Glyma.14G013000 0.5kb downstream 0.5kb downstream 2156 true Chr14: 979443-981598 Glycine max
Glyma.14G013000 0.5kb downstream 0.5kb downstream 500 false Chr14: 979443-979942 Glycine max
Glyma.14G013000 1.0kb upstream 1.0kb upstream 2656 true Chr14: 979943-982598 Glycine max
Glyma.14G013000 1.0kb upstream 1.0kb upstream 1000 false Chr14: 981599-982598 Glycine max
Glyma.14G013000 1.0kb downstream 1.0kb downstream 2656 true Chr14: 978943-981598 Glycine max
Glyma.14G013000 1.0kb downstream 1.0kb downstream 1000 false Chr14: 978943-979942 Glycine max
Glyma.14G013000 2.0kb upstream 2.0kb upstream 3656 true Chr14: 979943-983598 Glycine max
Glyma.14G013000 2.0kb upstream 2.0kb upstream 2000 false Chr14: 981599-983598 Glycine max
Glyma.14G013000 2.0kb downstream 2.0kb downstream 3656 true Chr14: 977943-981598 Glycine max
Glyma.14G013000 2.0kb downstream 2.0kb downstream 2000 false Chr14: 977943-979942 Glycine max
Glyma.14G013000 5.0kb upstream 5.0kb upstream 6656 true Chr14: 979943-986598 Glycine max
Glyma.14G013000 5.0kb upstream 5.0kb upstream 5000 false Chr14: 981599-986598 Glycine max
Glyma.14G013000 5.0kb downstream 5.0kb downstream 6656 true Chr14: 974943-981598 Glycine max
Glyma.14G013000 5.0kb downstream 5.0kb downstream 5000 false Chr14: 974943-979942 Glycine max
Glyma.14G013000 10.0kb upstream 10.0kb upstream 11656 true Chr14: 979943-991598 Glycine max
Glyma.14G013000 10.0kb upstream 10.0kb upstream 10000 false Chr14: 981599-991598 Glycine max
Glyma.14G013000 10.0kb downstream 10.0kb downstream 11656 true Chr14: 969943-981598 Glycine max
Glyma.14G013000 10.0kb downstream 10.0kb downstream 10000 false Chr14: 969943-979942 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312019 5265 Fabidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 2.28956 0.0 8.28322   High
cufflinks 0.0627362 0.0 0.271746 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0747202 0.0 0.320215 Low  
cufflinks 0.0349695 0.0 0.160168 Low  
cufflinks 0.0378833 0.0 0.171459 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.211        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.893        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain