Gene : Glyma.14G111800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11879:SF1 - ASPARTATE AMINOTRANSFERASE, CHLOROPLASTIC Genomic Order:  1118
Name:  ? Glyma.14G111800 Secondary Identifier:  ? PAC:30533292
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax ASPARTATE-DEG1-PWY Glycine max pathologic  
Gmax ASPARTATESYN-PWY Glycine max pathologic  
Gmax PWY-3001 Glycine max pathologic  
Gmax PWY-7115 Glycine max pathologic  
Gmax PWY-7117 Glycine max pathologic  
Gmax THRESYN-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.14G111800 0.5kb upstream 0.5kb upstream 5730 true Chr14: 12841909-12847638 Glycine max
Glyma.14G111800 0.5kb upstream 0.5kb upstream 500 false Chr14: 12841909-12842408 Glycine max
Glyma.14G111800 0.5kb downstream 0.5kb downstream 5730 true Chr14: 12842409-12848138 Glycine max
Glyma.14G111800 0.5kb downstream 0.5kb downstream 500 false Chr14: 12847639-12848138 Glycine max
Glyma.14G111800 1.0kb upstream 1.0kb upstream 6230 true Chr14: 12841409-12847638 Glycine max
Glyma.14G111800 1.0kb upstream 1.0kb upstream 1000 false Chr14: 12841409-12842408 Glycine max
Glyma.14G111800 1.0kb downstream 1.0kb downstream 6230 true Chr14: 12842409-12848638 Glycine max
Glyma.14G111800 1.0kb downstream 1.0kb downstream 1000 false Chr14: 12847639-12848638 Glycine max
Glyma.14G111800 2.0kb upstream 2.0kb upstream 7230 true Chr14: 12840409-12847638 Glycine max
Glyma.14G111800 2.0kb upstream 2.0kb upstream 2000 false Chr14: 12840409-12842408 Glycine max
Glyma.14G111800 2.0kb downstream 2.0kb downstream 7230 true Chr14: 12842409-12849638 Glycine max
Glyma.14G111800 2.0kb downstream 2.0kb downstream 2000 false Chr14: 12847639-12849638 Glycine max
Glyma.14G111800 5.0kb upstream 5.0kb upstream 10230 true Chr14: 12837409-12847638 Glycine max
Glyma.14G111800 5.0kb upstream 5.0kb upstream 5000 false Chr14: 12837409-12842408 Glycine max
Glyma.14G111800 5.0kb downstream 5.0kb downstream 10230 true Chr14: 12842409-12852638 Glycine max
Glyma.14G111800 5.0kb downstream 5.0kb downstream 5000 false Chr14: 12847639-12852638 Glycine max
Glyma.14G111800 10.0kb upstream 10.0kb upstream 15230 true Chr14: 12832409-12847638 Glycine max
Glyma.14G111800 10.0kb upstream 10.0kb upstream 10000 false Chr14: 12832409-12842408 Glycine max
Glyma.14G111800 10.0kb downstream 10.0kb downstream 15230 true Chr14: 12842409-12857638 Glycine max
Glyma.14G111800 10.0kb downstream 10.0kb downstream 10000 false Chr14: 12847639-12857638 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303069 5265 Fabidae View MSA
124066749 5270 Rosid View MSA
123740507 5271 Pentapetalae View MSA
122797537 5272 Eudicot View MSA
122048100 5273 Angiosperm View MSA
121346908 5274 Embryophyte View MSA
123424622 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.1581 0.0 36.1398    
cufflinks 11.8696 0.0 44.3282    
cufflinks 11.5082 0.0 43.6091    
cufflinks 23.0099 0.0 86.2515 High High
cufflinks 18.3663 0.0 67.9964    
cufflinks 6.86506 0.0 28.686   Low
cufflinks 18.5234 0.0 70.2336    
cufflinks 12.0883 0.0 45.8832    
cufflinks 23.3468 0.0 88.748 High High
cufflinks 1.925        
cufflinks 5.822     High High
cufflinks 2.22        
cufflinks 1.62        
cufflinks 2.248        
cufflinks 13.45     High High
cufflinks 0.599       Low
cufflinks 0.761        
cufflinks 2.752        
cufflinks 1.68        
cufflinks 0.501       Low
cufflinks 9.757     High High
cufflinks 0.631       Low
cufflinks 0.523       Low
cufflinks 3.159        
cufflinks 0.552       Low
cufflinks 4.538        

0 Strain