Gene : Glyma.14G160600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  1606
Name:  ? Glyma.14G160600 Secondary Identifier:  ? PAC:30534426
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.14G160600 0.5kb upstream 0.5kb upstream 5727 true Chr14: 37369097-37374823 Glycine max
Glyma.14G160600 0.5kb upstream 0.5kb upstream 500 false Chr14: 37374324-37374823 Glycine max
Glyma.14G160600 0.5kb downstream 0.5kb downstream 5727 true Chr14: 37368597-37374323 Glycine max
Glyma.14G160600 0.5kb downstream 0.5kb downstream 500 false Chr14: 37368597-37369096 Glycine max
Glyma.14G160600 1.0kb upstream 1.0kb upstream 6227 true Chr14: 37369097-37375323 Glycine max
Glyma.14G160600 1.0kb upstream 1.0kb upstream 1000 false Chr14: 37374324-37375323 Glycine max
Glyma.14G160600 1.0kb downstream 1.0kb downstream 6227 true Chr14: 37368097-37374323 Glycine max
Glyma.14G160600 1.0kb downstream 1.0kb downstream 1000 false Chr14: 37368097-37369096 Glycine max
Glyma.14G160600 2.0kb upstream 2.0kb upstream 7227 true Chr14: 37369097-37376323 Glycine max
Glyma.14G160600 2.0kb upstream 2.0kb upstream 2000 false Chr14: 37374324-37376323 Glycine max
Glyma.14G160600 2.0kb downstream 2.0kb downstream 7227 true Chr14: 37367097-37374323 Glycine max
Glyma.14G160600 2.0kb downstream 2.0kb downstream 2000 false Chr14: 37367097-37369096 Glycine max
Glyma.14G160600 5.0kb upstream 5.0kb upstream 10227 true Chr14: 37369097-37379323 Glycine max
Glyma.14G160600 5.0kb upstream 5.0kb upstream 5000 false Chr14: 37374324-37379323 Glycine max
Glyma.14G160600 5.0kb downstream 5.0kb downstream 10227 true Chr14: 37364097-37374323 Glycine max
Glyma.14G160600 5.0kb downstream 5.0kb downstream 5000 false Chr14: 37364097-37369096 Glycine max
Glyma.14G160600 10.0kb upstream 10.0kb upstream 15227 true Chr14: 37369097-37384323 Glycine max
Glyma.14G160600 10.0kb upstream 10.0kb upstream 10000 false Chr14: 37374324-37384323 Glycine max
Glyma.14G160600 10.0kb downstream 10.0kb downstream 15227 true Chr14: 37359097-37374323 Glycine max
Glyma.14G160600 10.0kb downstream 10.0kb downstream 10000 false Chr14: 37359097-37369096 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026363 5273 Angiosperm View MSA
122311905 5265 Fabidae View MSA
124065012 5270 Rosid View MSA
123740689 5271 Pentapetalae View MSA
122788659 5272 Eudicot View MSA
121349199 5274 Embryophyte View MSA
123381214 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.4884 0.0 46.7002   High
cufflinks 6.86815 0.0 18.9051    
cufflinks 3.98094 0.0 11.555    
cufflinks 8.40755 0.0 22.8103    
cufflinks 2.13428 0.0 6.8156   Low
cufflinks 4.04145 0.0 11.7788    
cufflinks 3.03154 0.0 9.21827    
cufflinks 5.4702 0.0 15.3746    
cufflinks 1.70736 0.0 5.60643   Low
cufflinks 4.304        
cufflinks 0.53       Low
cufflinks 3.293        
cufflinks 2.448        
cufflinks 1.554        
cufflinks 0.794        
cufflinks 13.713     High High
cufflinks 0.833        
cufflinks 3.23        
cufflinks 4.962        
cufflinks 8.045     High  
cufflinks 0.614       Low
cufflinks 12.203     High High
cufflinks 7.881     High  
cufflinks 0.447       Low
cufflinks 14.725     High High
cufflinks 0.992        

0 Strain