Gene : Glyma.14G147200 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR31423:SF3 - PROLYL-TRNA SYNTHETASE ASSOCIATED DOMAIN-CONTAINING PROTEIN 1-RELATED Genomic Order:  1472
Name:  ? Glyma.14G147200 Secondary Identifier:  ? PAC:30531933
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.14G147200 0.5kb upstream 0.5kb upstream 7708 true Chr14: 31405613-31413320 Glycine max
Glyma.14G147200 0.5kb upstream 0.5kb upstream 500 false Chr14: 31412821-31413320 Glycine max
Glyma.14G147200 0.5kb downstream 0.5kb downstream 7708 true Chr14: 31405113-31412820 Glycine max
Glyma.14G147200 0.5kb downstream 0.5kb downstream 500 false Chr14: 31405113-31405612 Glycine max
Glyma.14G147200 1.0kb upstream 1.0kb upstream 8208 true Chr14: 31405613-31413820 Glycine max
Glyma.14G147200 1.0kb upstream 1.0kb upstream 1000 false Chr14: 31412821-31413820 Glycine max
Glyma.14G147200 1.0kb downstream 1.0kb downstream 8208 true Chr14: 31404613-31412820 Glycine max
Glyma.14G147200 1.0kb downstream 1.0kb downstream 1000 false Chr14: 31404613-31405612 Glycine max
Glyma.14G147200 2.0kb upstream 2.0kb upstream 9208 true Chr14: 31405613-31414820 Glycine max
Glyma.14G147200 2.0kb upstream 2.0kb upstream 2000 false Chr14: 31412821-31414820 Glycine max
Glyma.14G147200 2.0kb downstream 2.0kb downstream 9208 true Chr14: 31403613-31412820 Glycine max
Glyma.14G147200 2.0kb downstream 2.0kb downstream 2000 false Chr14: 31403613-31405612 Glycine max
Glyma.14G147200 5.0kb upstream 5.0kb upstream 12208 true Chr14: 31405613-31417820 Glycine max
Glyma.14G147200 5.0kb upstream 5.0kb upstream 5000 false Chr14: 31412821-31417820 Glycine max
Glyma.14G147200 5.0kb downstream 5.0kb downstream 12208 true Chr14: 31400613-31412820 Glycine max
Glyma.14G147200 5.0kb downstream 5.0kb downstream 5000 false Chr14: 31400613-31405612 Glycine max
Glyma.14G147200 10.0kb upstream 10.0kb upstream 17208 true Chr14: 31405613-31422820 Glycine max
Glyma.14G147200 10.0kb upstream 10.0kb upstream 10000 false Chr14: 31412821-31422820 Glycine max
Glyma.14G147200 10.0kb downstream 10.0kb downstream 17208 true Chr14: 31395613-31412820 Glycine max
Glyma.14G147200 10.0kb downstream 10.0kb downstream 10000 false Chr14: 31395613-31405612 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122246544 5265 Fabidae Singleton cluster - no MSA
124062922 5270 Rosid View MSA
123736377 5271 Pentapetalae View MSA
122789736 5272 Eudicot View MSA
122045268 5273 Angiosperm View MSA
121348045 5274 Embryophyte View MSA
123425543 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.08144 0.0 29.4185   Low
cufflinks 14.613 0.0 51.8924   High
cufflinks 6.22926 0.0 27.2102   Low
cufflinks 13.9076 0.0 49.0276    
cufflinks 11.9023 0.0 43.1312    
cufflinks 9.7695 0.0 36.6686    
cufflinks 8.63258 0.0 33.1115    
cufflinks 16.7515 0.0 58.2899   High
cufflinks 9.77897 0.0 36.4697    
cufflinks 1.262        
cufflinks 0.236       Low
cufflinks 0.815        
cufflinks 1.199        
cufflinks 1.476       High
cufflinks 0.381        
cufflinks 0.955        
cufflinks 0.496        
cufflinks 1.102        
cufflinks 1.224        
cufflinks 0.894        
cufflinks 0.291       Low
cufflinks 0.778        
cufflinks 0.918        
cufflinks 0.247       Low
cufflinks 0.917        
cufflinks 0.402        

0 Strain