Gene : Glyma.14G208000 G. max Wm82.a2.v1

Defline:  (1 of 4) PTHR31852:SF1 - LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN-RELATED Genomic Order:  2080
Name:  ? Glyma.14G208000 Secondary Identifier:  ? PAC:30535185

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.14G208000 0.5kb upstream 0.5kb upstream 1603 true Chr14: 47378661-47380263 Glycine max
Glyma.14G208000 0.5kb upstream 0.5kb upstream 500 false Chr14: 47378661-47379160 Glycine max
Glyma.14G208000 0.5kb downstream 0.5kb downstream 1603 true Chr14: 47379161-47380763 Glycine max
Glyma.14G208000 0.5kb downstream 0.5kb downstream 500 false Chr14: 47380264-47380763 Glycine max
Glyma.14G208000 1.0kb upstream 1.0kb upstream 2103 true Chr14: 47378161-47380263 Glycine max
Glyma.14G208000 1.0kb upstream 1.0kb upstream 1000 false Chr14: 47378161-47379160 Glycine max
Glyma.14G208000 1.0kb downstream 1.0kb downstream 2103 true Chr14: 47379161-47381263 Glycine max
Glyma.14G208000 1.0kb downstream 1.0kb downstream 1000 false Chr14: 47380264-47381263 Glycine max
Glyma.14G208000 2.0kb upstream 2.0kb upstream 3103 true Chr14: 47377161-47380263 Glycine max
Glyma.14G208000 2.0kb upstream 2.0kb upstream 2000 false Chr14: 47377161-47379160 Glycine max
Glyma.14G208000 2.0kb downstream 2.0kb downstream 3103 true Chr14: 47379161-47382263 Glycine max
Glyma.14G208000 2.0kb downstream 2.0kb downstream 2000 false Chr14: 47380264-47382263 Glycine max
Glyma.14G208000 5.0kb upstream 5.0kb upstream 6103 true Chr14: 47374161-47380263 Glycine max
Glyma.14G208000 5.0kb upstream 5.0kb upstream 5000 false Chr14: 47374161-47379160 Glycine max
Glyma.14G208000 5.0kb downstream 5.0kb downstream 6103 true Chr14: 47379161-47385263 Glycine max
Glyma.14G208000 5.0kb downstream 5.0kb downstream 5000 false Chr14: 47380264-47385263 Glycine max
Glyma.14G208000 10.0kb upstream 10.0kb upstream 11103 true Chr14: 47369161-47380263 Glycine max
Glyma.14G208000 10.0kb upstream 10.0kb upstream 10000 false Chr14: 47369161-47379160 Glycine max
Glyma.14G208000 10.0kb downstream 10.0kb downstream 11103 true Chr14: 47379161-47390263 Glycine max
Glyma.14G208000 10.0kb downstream 10.0kb downstream 10000 false Chr14: 47380264-47390263 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313282 5265 Fabidae View MSA
124063776 5270 Rosid View MSA
123751487 5271 Pentapetalae View MSA
122787858 5272 Eudicot View MSA
122044505 5273 Angiosperm View MSA
121351108 5274 Embryophyte View MSA
123382008 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.55526 0.0 5.51778    
cufflinks 0.192637 0.0 0.757865 Low Low
cufflinks 0.747983 0.0 2.77159    
cufflinks 0.116312 0.0 0.465677 Low Low
cufflinks 1.2619 0.0 4.54658    
cufflinks 2.38994 0.0 8.1633   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.287991 0.0 1.11428    
cufflinks 0.717375 0.0 2.66773    
cufflinks 1.002        
cufflinks 37.269     High High
cufflinks 0.934        
cufflinks 1.282        
cufflinks 0.132       Low
cufflinks 21.511     High High
cufflinks 0.34        
cufflinks 13.987     High  
cufflinks 0.225        
cufflinks 0.314        
cufflinks 0.18       Low
cufflinks 14.867     High High
cufflinks 0.407        
cufflinks 0.878        
cufflinks 41.585     High High
cufflinks 0.125       Low
cufflinks 27.312     High High

0 Strain