Gene : Glyma.14G197300 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR31165:SF14 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 Genomic Order:  1973
Name:  ? Glyma.14G197300 Secondary Identifier:  ? PAC:30532940
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.14G197300 0.5kb upstream 0.5kb upstream 1885 true Chr14: 46238760-46240644 Glycine max
Glyma.14G197300 0.5kb upstream 0.5kb upstream 500 false Chr14: 46238760-46239259 Glycine max
Glyma.14G197300 0.5kb downstream 0.5kb downstream 1885 true Chr14: 46239260-46241144 Glycine max
Glyma.14G197300 0.5kb downstream 0.5kb downstream 500 false Chr14: 46240645-46241144 Glycine max
Glyma.14G197300 1.0kb upstream 1.0kb upstream 2385 true Chr14: 46238260-46240644 Glycine max
Glyma.14G197300 1.0kb upstream 1.0kb upstream 1000 false Chr14: 46238260-46239259 Glycine max
Glyma.14G197300 1.0kb downstream 1.0kb downstream 2385 true Chr14: 46239260-46241644 Glycine max
Glyma.14G197300 1.0kb downstream 1.0kb downstream 1000 false Chr14: 46240645-46241644 Glycine max
Glyma.14G197300 2.0kb upstream 2.0kb upstream 3385 true Chr14: 46237260-46240644 Glycine max
Glyma.14G197300 2.0kb upstream 2.0kb upstream 2000 false Chr14: 46237260-46239259 Glycine max
Glyma.14G197300 2.0kb downstream 2.0kb downstream 3385 true Chr14: 46239260-46242644 Glycine max
Glyma.14G197300 2.0kb downstream 2.0kb downstream 2000 false Chr14: 46240645-46242644 Glycine max
Glyma.14G197300 5.0kb upstream 5.0kb upstream 6385 true Chr14: 46234260-46240644 Glycine max
Glyma.14G197300 5.0kb upstream 5.0kb upstream 5000 false Chr14: 46234260-46239259 Glycine max
Glyma.14G197300 5.0kb downstream 5.0kb downstream 6385 true Chr14: 46239260-46245644 Glycine max
Glyma.14G197300 5.0kb downstream 5.0kb downstream 5000 false Chr14: 46240645-46245644 Glycine max
Glyma.14G197300 10.0kb upstream 10.0kb upstream 11385 true Chr14: 46229260-46240644 Glycine max
Glyma.14G197300 10.0kb upstream 10.0kb upstream 10000 false Chr14: 46229260-46239259 Glycine max
Glyma.14G197300 10.0kb downstream 10.0kb downstream 11385 true Chr14: 46239260-46250644 Glycine max
Glyma.14G197300 10.0kb downstream 10.0kb downstream 10000 false Chr14: 46240645-46250644 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310216 5265 Fabidae View MSA
124067272 5270 Rosid View MSA
123741885 5271 Pentapetalae View MSA
122789357 5272 Eudicot View MSA
122049887 5273 Angiosperm View MSA
121351474 5274 Embryophyte View MSA
123382179 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.80025 0.0 6.30893   Low
cufflinks 3.39385 0.0 11.0952    
cufflinks 2.61368 0.0 8.84218    
cufflinks 1.99378 0.0 6.92645   Low
cufflinks 8.07026 0.0 23.2558   High
cufflinks 3.17678 0.0 10.4363    
cufflinks 3.15565 0.0 10.3836    
cufflinks 6.39046 0.0 19.0618    
cufflinks 10.6928 0.0 29.8909   High
cufflinks 3.39       High
cufflinks 0.723       Low
cufflinks 2.557       High
cufflinks 1.09        
cufflinks 0.719       Low
cufflinks 1.242        
cufflinks 1.459        
cufflinks 0.787        
cufflinks 3.008       High
cufflinks 2.789       High
cufflinks 1.148        
cufflinks 0.938        
cufflinks 1.748        
cufflinks 1.809        
cufflinks 1.182        
cufflinks 0.926        
cufflinks 0.575       Low

0 Strain