Gene : Glyma.15G016600 G. max Wm82.a2.v1
Defline:  (1 of 113) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  166
Name:  ? Glyma.15G016600 Secondary Identifier:  ? PAC:30499613
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G016600 0.5kb upstream 0.5kb upstream 2915 true Chr15: 1291657-1294571 Glycine max
Glyma.15G016600 0.5kb upstream 0.5kb upstream 500 false Chr15: 1291657-1292156 Glycine max
Glyma.15G016600 0.5kb downstream 0.5kb downstream 2915 true Chr15: 1292157-1295071 Glycine max
Glyma.15G016600 0.5kb downstream 0.5kb downstream 500 false Chr15: 1294572-1295071 Glycine max
Glyma.15G016600 1.0kb upstream 1.0kb upstream 3415 true Chr15: 1291157-1294571 Glycine max
Glyma.15G016600 1.0kb upstream 1.0kb upstream 1000 false Chr15: 1291157-1292156 Glycine max
Glyma.15G016600 1.0kb downstream 1.0kb downstream 3415 true Chr15: 1292157-1295571 Glycine max
Glyma.15G016600 1.0kb downstream 1.0kb downstream 1000 false Chr15: 1294572-1295571 Glycine max
Glyma.15G016600 2.0kb upstream 2.0kb upstream 4415 true Chr15: 1290157-1294571 Glycine max
Glyma.15G016600 2.0kb upstream 2.0kb upstream 2000 false Chr15: 1290157-1292156 Glycine max
Glyma.15G016600 2.0kb downstream 2.0kb downstream 4415 true Chr15: 1292157-1296571 Glycine max
Glyma.15G016600 2.0kb downstream 2.0kb downstream 2000 false Chr15: 1294572-1296571 Glycine max
Glyma.15G016600 5.0kb upstream 5.0kb upstream 7415 true Chr15: 1287157-1294571 Glycine max
Glyma.15G016600 5.0kb upstream 5.0kb upstream 5000 false Chr15: 1287157-1292156 Glycine max
Glyma.15G016600 5.0kb downstream 5.0kb downstream 7415 true Chr15: 1292157-1299571 Glycine max
Glyma.15G016600 5.0kb downstream 5.0kb downstream 5000 false Chr15: 1294572-1299571 Glycine max
Glyma.15G016600 10.0kb upstream 10.0kb upstream 12415 true Chr15: 1282157-1294571 Glycine max
Glyma.15G016600 10.0kb upstream 10.0kb upstream 10000 false Chr15: 1282157-1292156 Glycine max
Glyma.15G016600 10.0kb downstream 10.0kb downstream 12415 true Chr15: 1292157-1304571 Glycine max
Glyma.15G016600 10.0kb downstream 10.0kb downstream 10000 false Chr15: 1294572-1304571 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027491 5273 Angiosperm View MSA
122297688 5265 Fabidae View MSA
124070113 5270 Rosid View MSA
123753025 5271 Pentapetalae View MSA
122794671 5272 Eudicot View MSA
121352423 5274 Embryophyte View MSA
123382766 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.73518 0.0 8.20957   High
cufflinks 2.13099 0.0 6.62484    
cufflinks 1.18202 0.0 3.96945   Low
cufflinks 1.63677 0.0 5.28234    
cufflinks 1.4766 0.0 4.8383    
cufflinks 1.23679 0.0 4.14081   Low
cufflinks 2.09327 0.0 6.53109    
cufflinks 1.6967 0.0 5.44451    
cufflinks 1.81717 0.0 5.77355    
cufflinks 0.842        
cufflinks 0.452       Low
cufflinks 1.998        
cufflinks 1.963        
cufflinks 2.853       High
cufflinks 0.466       Low
cufflinks 1.286        
cufflinks 0.97        
cufflinks 2.03        
cufflinks 2.785       High
cufflinks 1.117        
cufflinks 0.43       Low
cufflinks 1.302        
cufflinks 1.769        
cufflinks 0.442       Low
cufflinks 1.264        
cufflinks 0.635        

0 Strain