Gene : Glyma.15G013100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11370 - DNA-REPAIR PROTEIN XRCC1 Genomic Order:  131
Name:  ? Glyma.15G013100 Secondary Identifier:  ? PAC:30498539
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G013100 0.5kb upstream 0.5kb upstream 4682 true Chr15: 1055874-1060555 Glycine max
Glyma.15G013100 0.5kb upstream 0.5kb upstream 500 false Chr15: 1060056-1060555 Glycine max
Glyma.15G013100 0.5kb downstream 0.5kb downstream 4682 true Chr15: 1055374-1060055 Glycine max
Glyma.15G013100 0.5kb downstream 0.5kb downstream 500 false Chr15: 1055374-1055873 Glycine max
Glyma.15G013100 1.0kb upstream 1.0kb upstream 5182 true Chr15: 1055874-1061055 Glycine max
Glyma.15G013100 1.0kb upstream 1.0kb upstream 1000 false Chr15: 1060056-1061055 Glycine max
Glyma.15G013100 1.0kb downstream 1.0kb downstream 5182 true Chr15: 1054874-1060055 Glycine max
Glyma.15G013100 1.0kb downstream 1.0kb downstream 1000 false Chr15: 1054874-1055873 Glycine max
Glyma.15G013100 2.0kb upstream 2.0kb upstream 6182 true Chr15: 1055874-1062055 Glycine max
Glyma.15G013100 2.0kb upstream 2.0kb upstream 2000 false Chr15: 1060056-1062055 Glycine max
Glyma.15G013100 2.0kb downstream 2.0kb downstream 6182 true Chr15: 1053874-1060055 Glycine max
Glyma.15G013100 2.0kb downstream 2.0kb downstream 2000 false Chr15: 1053874-1055873 Glycine max
Glyma.15G013100 5.0kb upstream 5.0kb upstream 9182 true Chr15: 1055874-1065055 Glycine max
Glyma.15G013100 5.0kb upstream 5.0kb upstream 5000 false Chr15: 1060056-1065055 Glycine max
Glyma.15G013100 5.0kb downstream 5.0kb downstream 9182 true Chr15: 1050874-1060055 Glycine max
Glyma.15G013100 5.0kb downstream 5.0kb downstream 5000 false Chr15: 1050874-1055873 Glycine max
Glyma.15G013100 10.0kb upstream 10.0kb upstream 14182 true Chr15: 1055874-1070055 Glycine max
Glyma.15G013100 10.0kb upstream 10.0kb upstream 10000 false Chr15: 1060056-1070055 Glycine max
Glyma.15G013100 10.0kb downstream 10.0kb downstream 14182 true Chr15: 1045874-1060055 Glycine max
Glyma.15G013100 10.0kb downstream 10.0kb downstream 10000 false Chr15: 1045874-1055873 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302854 5265 Fabidae View MSA
124064277 5270 Rosid View MSA
123745081 5271 Pentapetalae View MSA
122790473 5272 Eudicot View MSA
122046298 5273 Angiosperm View MSA
121347821 5274 Embryophyte View MSA
123380641 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.38553 0.0 18.2208    
cufflinks 4.36827 0.0 26.6951    
cufflinks 2.04625 0.0 17.7699    
cufflinks 4.25468 0.0 26.3735    
cufflinks 1.86532 0.0 15.9556   Low
cufflinks 2.50636 0.0 18.7761    
cufflinks 7.11534 0.0 37.264   High
cufflinks 2.88846 0.0 20.8807    
cufflinks 2.19998 0.0 13.0812    
cufflinks 0.227        
cufflinks 0.124       Low
cufflinks 0.389        
cufflinks 0.246        
cufflinks 0.338        
cufflinks 0.213        
cufflinks 0.44        
cufflinks 0.089       Low
cufflinks 0.456        
cufflinks 0.526       High
cufflinks 0.574       High
cufflinks 0.188        
cufflinks 0.512       High
cufflinks 0.438        
cufflinks 0.15       Low
cufflinks 0.474        
cufflinks 0.153       Low

0 Strain