Gene : Glyma.15G001600 G. max Wm82.a2.v1
Defline:  (1 of 12) KOG1397 - Ca2+/H+ antiporter VCX1 and related proteins Genomic Order:  16
Name:  ? Glyma.15G001600 Secondary Identifier:  ? PAC:30496389
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G001600 0.5kb upstream 0.5kb upstream 7606 true Chr15: 181781-189386 Glycine max
Glyma.15G001600 0.5kb upstream 0.5kb upstream 500 false Chr15: 181781-182280 Glycine max
Glyma.15G001600 0.5kb downstream 0.5kb downstream 7606 true Chr15: 182281-189886 Glycine max
Glyma.15G001600 0.5kb downstream 0.5kb downstream 500 false Chr15: 189387-189886 Glycine max
Glyma.15G001600 1.0kb upstream 1.0kb upstream 8106 true Chr15: 181281-189386 Glycine max
Glyma.15G001600 1.0kb upstream 1.0kb upstream 1000 false Chr15: 181281-182280 Glycine max
Glyma.15G001600 1.0kb downstream 1.0kb downstream 8106 true Chr15: 182281-190386 Glycine max
Glyma.15G001600 1.0kb downstream 1.0kb downstream 1000 false Chr15: 189387-190386 Glycine max
Glyma.15G001600 2.0kb upstream 2.0kb upstream 9106 true Chr15: 180281-189386 Glycine max
Glyma.15G001600 2.0kb upstream 2.0kb upstream 2000 false Chr15: 180281-182280 Glycine max
Glyma.15G001600 2.0kb downstream 2.0kb downstream 9106 true Chr15: 182281-191386 Glycine max
Glyma.15G001600 2.0kb downstream 2.0kb downstream 2000 false Chr15: 189387-191386 Glycine max
Glyma.15G001600 5.0kb upstream 5.0kb upstream 12106 true Chr15: 177281-189386 Glycine max
Glyma.15G001600 5.0kb upstream 5.0kb upstream 5000 false Chr15: 177281-182280 Glycine max
Glyma.15G001600 5.0kb downstream 5.0kb downstream 12106 true Chr15: 182281-194386 Glycine max
Glyma.15G001600 5.0kb downstream 5.0kb downstream 5000 false Chr15: 189387-194386 Glycine max
Glyma.15G001600 10.0kb upstream 10.0kb upstream 17106 true Chr15: 172281-189386 Glycine max
Glyma.15G001600 10.0kb upstream 10.0kb upstream 10000 false Chr15: 172281-182280 Glycine max
Glyma.15G001600 10.0kb downstream 10.0kb downstream 17106 true Chr15: 182281-199386 Glycine max
Glyma.15G001600 10.0kb downstream 10.0kb downstream 10000 false Chr15: 189387-199386 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313363 5265 Fabidae View MSA
124071439 5270 Rosid View MSA
123747660 5271 Pentapetalae View MSA
122792881 5272 Eudicot View MSA
122045212 5273 Angiosperm View MSA
121347037 5274 Embryophyte View MSA
123427763 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.7014 0.0 55.4187    
cufflinks 11.3226 0.0 38.5081    
cufflinks 14.3618 0.0 47.73    
cufflinks 14.9946 0.0 49.712    
cufflinks 15.4967 0.0 51.8214    
cufflinks 9.15692 0.0 31.827    
cufflinks 6.13983 0.0 23.2355   Low
cufflinks 17.6154 0.0 57.9609    
cufflinks 12.9537 0.0 43.2803    
cufflinks 3.347       High
cufflinks 2.577        
cufflinks 2.35        
cufflinks 2.377        
cufflinks 3.145       High
cufflinks 1.537       Low
cufflinks 2.731        
cufflinks 3.442       High
cufflinks 2.6        
cufflinks 2.356        
cufflinks 2.639        
cufflinks 2.098       Low
cufflinks 2.945        
cufflinks 2.739        
cufflinks 2.965        
cufflinks 2.695        
cufflinks 1.946       Low

0 Strain