Gene : Glyma.15G038300 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  383
Name:  ? Glyma.15G038300 Secondary Identifier:  ? PAC:30499104
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Ontology Annotation Displayer

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Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G038300 0.5kb upstream 0.5kb upstream 2498 true Chr15: 3023349-3025846 Glycine max
Glyma.15G038300 0.5kb upstream 0.5kb upstream 500 false Chr15: 3025347-3025846 Glycine max
Glyma.15G038300 0.5kb downstream 0.5kb downstream 2498 true Chr15: 3022849-3025346 Glycine max
Glyma.15G038300 0.5kb downstream 0.5kb downstream 500 false Chr15: 3022849-3023348 Glycine max
Glyma.15G038300 1.0kb upstream 1.0kb upstream 2998 true Chr15: 3023349-3026346 Glycine max
Glyma.15G038300 1.0kb upstream 1.0kb upstream 1000 false Chr15: 3025347-3026346 Glycine max
Glyma.15G038300 1.0kb downstream 1.0kb downstream 2998 true Chr15: 3022349-3025346 Glycine max
Glyma.15G038300 1.0kb downstream 1.0kb downstream 1000 false Chr15: 3022349-3023348 Glycine max
Glyma.15G038300 2.0kb upstream 2.0kb upstream 3998 true Chr15: 3023349-3027346 Glycine max
Glyma.15G038300 2.0kb upstream 2.0kb upstream 2000 false Chr15: 3025347-3027346 Glycine max
Glyma.15G038300 2.0kb downstream 2.0kb downstream 3998 true Chr15: 3021349-3025346 Glycine max
Glyma.15G038300 2.0kb downstream 2.0kb downstream 2000 false Chr15: 3021349-3023348 Glycine max
Glyma.15G038300 5.0kb upstream 5.0kb upstream 6998 true Chr15: 3023349-3030346 Glycine max
Glyma.15G038300 5.0kb upstream 5.0kb upstream 5000 false Chr15: 3025347-3030346 Glycine max
Glyma.15G038300 5.0kb downstream 5.0kb downstream 6998 true Chr15: 3018349-3025346 Glycine max
Glyma.15G038300 5.0kb downstream 5.0kb downstream 5000 false Chr15: 3018349-3023348 Glycine max
Glyma.15G038300 10.0kb upstream 10.0kb upstream 11998 true Chr15: 3023349-3035346 Glycine max
Glyma.15G038300 10.0kb upstream 10.0kb upstream 10000 false Chr15: 3025347-3035346 Glycine max
Glyma.15G038300 10.0kb downstream 10.0kb downstream 11998 true Chr15: 3013349-3025346 Glycine max
Glyma.15G038300 10.0kb downstream 10.0kb downstream 10000 false Chr15: 3013349-3023348 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305758 5265 Fabidae View MSA
124062524 5270 Rosid View MSA
123736942 5271 Pentapetalae View MSA
122790560 5272 Eudicot View MSA
122046804 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.22745 0.0 4.2553   High
cufflinks 0.55317 0.0 2.02941    
cufflinks 0.439392 0.0 1.62949    
cufflinks 0.638854 0.0 2.32206    
cufflinks 0.61571 0.0 2.24535    
cufflinks 0.349512 0.0 1.31139   Low
cufflinks 0.57556 0.0 2.10772    
cufflinks 0.597302 0.0 2.1811    
cufflinks 0.551966 0.0 2.02507    
cufflinks 0.216       Low
cufflinks 0.267        
cufflinks 0.489        
cufflinks 0.762       High
cufflinks 1.007       High
cufflinks 0.41        
cufflinks 0.286        
cufflinks 0.376        
cufflinks 0.347        
cufflinks 0.489        
cufflinks 0.286        
cufflinks 0.191       Low
cufflinks 0.401        
cufflinks 0.505        
cufflinks 0.298        
cufflinks 0.291        
cufflinks 0.289        

0 Strain