Gene : Glyma.15G027500 G. max Wm82.a2.v1
Defline:  (1 of 2) PF06741//PF07145//PF14438 - LsmAD domain (LsmAD) // Ataxin-2 C-terminal region (PAM2) // Ataxin 2 SM domain (SM-ATX) Genomic Order:  275
Name:  ? Glyma.15G027500 Secondary Identifier:  ? PAC:30495759
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G027500 0.5kb upstream 0.5kb upstream 8583 true Chr15: 2203883-2212465 Glycine max
Glyma.15G027500 0.5kb upstream 0.5kb upstream 500 false Chr15: 2211966-2212465 Glycine max
Glyma.15G027500 0.5kb downstream 0.5kb downstream 8583 true Chr15: 2203383-2211965 Glycine max
Glyma.15G027500 0.5kb downstream 0.5kb downstream 500 false Chr15: 2203383-2203882 Glycine max
Glyma.15G027500 1.0kb upstream 1.0kb upstream 9083 true Chr15: 2203883-2212965 Glycine max
Glyma.15G027500 1.0kb upstream 1.0kb upstream 1000 false Chr15: 2211966-2212965 Glycine max
Glyma.15G027500 1.0kb downstream 1.0kb downstream 9083 true Chr15: 2202883-2211965 Glycine max
Glyma.15G027500 1.0kb downstream 1.0kb downstream 1000 false Chr15: 2202883-2203882 Glycine max
Glyma.15G027500 2.0kb upstream 2.0kb upstream 10083 true Chr15: 2203883-2213965 Glycine max
Glyma.15G027500 2.0kb upstream 2.0kb upstream 2000 false Chr15: 2211966-2213965 Glycine max
Glyma.15G027500 2.0kb downstream 2.0kb downstream 10083 true Chr15: 2201883-2211965 Glycine max
Glyma.15G027500 2.0kb downstream 2.0kb downstream 2000 false Chr15: 2201883-2203882 Glycine max
Glyma.15G027500 5.0kb upstream 5.0kb upstream 13083 true Chr15: 2203883-2216965 Glycine max
Glyma.15G027500 5.0kb upstream 5.0kb upstream 5000 false Chr15: 2211966-2216965 Glycine max
Glyma.15G027500 5.0kb downstream 5.0kb downstream 13083 true Chr15: 2198883-2211965 Glycine max
Glyma.15G027500 5.0kb downstream 5.0kb downstream 5000 false Chr15: 2198883-2203882 Glycine max
Glyma.15G027500 10.0kb upstream 10.0kb upstream 18083 true Chr15: 2203883-2221965 Glycine max
Glyma.15G027500 10.0kb upstream 10.0kb upstream 10000 false Chr15: 2211966-2221965 Glycine max
Glyma.15G027500 10.0kb downstream 10.0kb downstream 18083 true Chr15: 2193883-2211965 Glycine max
Glyma.15G027500 10.0kb downstream 10.0kb downstream 10000 false Chr15: 2193883-2203882 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310988 5265 Fabidae View MSA
124063578 5270 Rosid View MSA
123743281 5271 Pentapetalae View MSA
122790252 5272 Eudicot View MSA
122049882 5273 Angiosperm View MSA
121348132 5274 Embryophyte View MSA
123427801 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.9379 0.0 70.2686    
cufflinks 22.7037 0.0 81.5163 High  
cufflinks 28.0046 0.0 105.307 High  
cufflinks 26.0299 0.0 96.0247 High  
cufflinks 23.487 0.0 84.7114 High  
cufflinks 16.2594 0.0 56.168   Low
cufflinks 70.7979 0.0 357.365 High High
cufflinks 16.8362 0.0 58.967    
cufflinks 27.2302 0.0 101.078 High  
cufflinks 1.725       Low
cufflinks 4.403       High
cufflinks 3.331        
cufflinks 2.494        
cufflinks 2.71        
cufflinks 4.183       High
cufflinks 3.051        
cufflinks 2.578        
cufflinks 3.15        
cufflinks 3.074        
cufflinks 3.973        
cufflinks 3.367        
cufflinks 3.64        
cufflinks 2.351       Low
cufflinks 4.03       High
cufflinks 3.399        
cufflinks 3.311        

0 Strain