Gene : Glyma.15G048000 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR10643 - KINETOCHORE PROTEIN NDC80 Genomic Order:  480
Name:  ? Glyma.15G048000 Secondary Identifier:  ? PAC:30497479
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G048000 0.5kb upstream 0.5kb upstream 4258 true Chr15: 3791060-3795317 Glycine max
Glyma.15G048000 0.5kb upstream 0.5kb upstream 500 false Chr15: 3794818-3795317 Glycine max
Glyma.15G048000 0.5kb downstream 0.5kb downstream 4258 true Chr15: 3790560-3794817 Glycine max
Glyma.15G048000 0.5kb downstream 0.5kb downstream 500 false Chr15: 3790560-3791059 Glycine max
Glyma.15G048000 1.0kb upstream 1.0kb upstream 4758 true Chr15: 3791060-3795817 Glycine max
Glyma.15G048000 1.0kb upstream 1.0kb upstream 1000 false Chr15: 3794818-3795817 Glycine max
Glyma.15G048000 1.0kb downstream 1.0kb downstream 4758 true Chr15: 3790060-3794817 Glycine max
Glyma.15G048000 1.0kb downstream 1.0kb downstream 1000 false Chr15: 3790060-3791059 Glycine max
Glyma.15G048000 2.0kb upstream 2.0kb upstream 5758 true Chr15: 3791060-3796817 Glycine max
Glyma.15G048000 2.0kb upstream 2.0kb upstream 2000 false Chr15: 3794818-3796817 Glycine max
Glyma.15G048000 2.0kb downstream 2.0kb downstream 5758 true Chr15: 3789060-3794817 Glycine max
Glyma.15G048000 2.0kb downstream 2.0kb downstream 2000 false Chr15: 3789060-3791059 Glycine max
Glyma.15G048000 5.0kb upstream 5.0kb upstream 8758 true Chr15: 3791060-3799817 Glycine max
Glyma.15G048000 5.0kb upstream 5.0kb upstream 5000 false Chr15: 3794818-3799817 Glycine max
Glyma.15G048000 5.0kb downstream 5.0kb downstream 8758 true Chr15: 3786060-3794817 Glycine max
Glyma.15G048000 5.0kb downstream 5.0kb downstream 5000 false Chr15: 3786060-3791059 Glycine max
Glyma.15G048000 10.0kb upstream 10.0kb upstream 13758 true Chr15: 3791060-3804817 Glycine max
Glyma.15G048000 10.0kb upstream 10.0kb upstream 10000 false Chr15: 3794818-3804817 Glycine max
Glyma.15G048000 10.0kb downstream 10.0kb downstream 13758 true Chr15: 3781060-3794817 Glycine max
Glyma.15G048000 10.0kb downstream 10.0kb downstream 10000 false Chr15: 3781060-3791059 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301198 5265 Fabidae View MSA
124064333 5270 Rosid View MSA
123737322 5271 Pentapetalae View MSA
122786074 5272 Eudicot View MSA
122049067 5273 Angiosperm View MSA
121344778 5274 Embryophyte View MSA
123428580 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.35907 0.0 12.3309   Low
cufflinks 8.20169 0.0 29.4283   High
cufflinks 3.64614 0.0 13.1467    
cufflinks 6.00602 0.0 22.796    
cufflinks 4.93676 0.0 16.2122    
cufflinks 3.05028 0.0 11.5342   Low
cufflinks 6.00693 0.0 22.8479    
cufflinks 5.0116 0.0 19.713    
cufflinks 5.05185 0.0 16.6498    
cufflinks 1.298        
cufflinks 0.397       Low
cufflinks 1.228        
cufflinks 1.242        
cufflinks 1.535        
cufflinks 0.82        
cufflinks 2.102       High
cufflinks 0.576       Low
cufflinks 1.21        
cufflinks 3.219       High
cufflinks 1.636        
cufflinks 0.59       Low
cufflinks 1.682        
cufflinks 2.381       High
cufflinks 0.702        
cufflinks 1.64        
cufflinks 0.697        

0 Strain