Gene : Glyma.15G048200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR21141:SF37 - MRNA TURNOVER PROTEIN 4 HOMOLOG Genomic Order:  482
Name:  ? Glyma.15G048200 Secondary Identifier:  ? PAC:30497171
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G048200 0.5kb upstream 0.5kb upstream 2948 true Chr15: 3812316-3815263 Glycine max
Glyma.15G048200 0.5kb upstream 0.5kb upstream 500 false Chr15: 3812316-3812815 Glycine max
Glyma.15G048200 0.5kb downstream 0.5kb downstream 2948 true Chr15: 3812816-3815763 Glycine max
Glyma.15G048200 0.5kb downstream 0.5kb downstream 500 false Chr15: 3815264-3815763 Glycine max
Glyma.15G048200 1.0kb upstream 1.0kb upstream 3448 true Chr15: 3811816-3815263 Glycine max
Glyma.15G048200 1.0kb upstream 1.0kb upstream 1000 false Chr15: 3811816-3812815 Glycine max
Glyma.15G048200 1.0kb downstream 1.0kb downstream 3448 true Chr15: 3812816-3816263 Glycine max
Glyma.15G048200 1.0kb downstream 1.0kb downstream 1000 false Chr15: 3815264-3816263 Glycine max
Glyma.15G048200 2.0kb upstream 2.0kb upstream 4448 true Chr15: 3810816-3815263 Glycine max
Glyma.15G048200 2.0kb upstream 2.0kb upstream 2000 false Chr15: 3810816-3812815 Glycine max
Glyma.15G048200 2.0kb downstream 2.0kb downstream 4448 true Chr15: 3812816-3817263 Glycine max
Glyma.15G048200 2.0kb downstream 2.0kb downstream 2000 false Chr15: 3815264-3817263 Glycine max
Glyma.15G048200 5.0kb upstream 5.0kb upstream 7448 true Chr15: 3807816-3815263 Glycine max
Glyma.15G048200 5.0kb upstream 5.0kb upstream 5000 false Chr15: 3807816-3812815 Glycine max
Glyma.15G048200 5.0kb downstream 5.0kb downstream 7448 true Chr15: 3812816-3820263 Glycine max
Glyma.15G048200 5.0kb downstream 5.0kb downstream 5000 false Chr15: 3815264-3820263 Glycine max
Glyma.15G048200 10.0kb upstream 10.0kb upstream 12448 true Chr15: 3802816-3815263 Glycine max
Glyma.15G048200 10.0kb upstream 10.0kb upstream 10000 false Chr15: 3802816-3812815 Glycine max
Glyma.15G048200 10.0kb downstream 10.0kb downstream 12448 true Chr15: 3812816-3825263 Glycine max
Glyma.15G048200 10.0kb downstream 10.0kb downstream 10000 false Chr15: 3815264-3825263 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302322 5265 Fabidae View MSA
124062070 5270 Rosid View MSA
123743293 5271 Pentapetalae View MSA
122790170 5272 Eudicot View MSA
122047939 5273 Angiosperm View MSA
121346262 5274 Embryophyte View MSA
123423929 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.9657 0.0 40.8083    
cufflinks 11.125 0.0 31.0578    
cufflinks 4.74062 0.0 14.6899   Low
cufflinks 9.77755 0.0 27.6146    
cufflinks 23.5108 0.0 62.8576 High High
cufflinks 16.2563 0.0 44.0866    
cufflinks 12.8922 0.0 35.5488    
cufflinks 11.8028 0.0 32.7669    
cufflinks 13.8954 0.0 38.0579    
cufflinks 4.175        
cufflinks 1.312       Low
cufflinks 5.428        
cufflinks 14.607     High High
cufflinks 21.556     High High
cufflinks 1.147       Low
cufflinks 3.09        
cufflinks 3.817        
cufflinks 4.893        
cufflinks 6.605        
cufflinks 2.023        
cufflinks 2.397        
cufflinks 2.25        
cufflinks 7.001        
cufflinks 1.376       Low
cufflinks 2.56        
cufflinks 3.636        

0 Strain