Gene : Glyma.15G054900 G. max Wm82.a2.v1
Defline:  (1 of 1) KOG0919 - C-5 cytosine-specific DNA methylase Genomic Order:  549
Name:  ? Glyma.15G054900 Secondary Identifier:  ? PAC:30498678
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G054900 0.5kb upstream 0.5kb upstream 5114 true Chr15: 4307958-4313071 Glycine max
Glyma.15G054900 0.5kb upstream 0.5kb upstream 500 false Chr15: 4307958-4308457 Glycine max
Glyma.15G054900 0.5kb downstream 0.5kb downstream 5114 true Chr15: 4308458-4313571 Glycine max
Glyma.15G054900 0.5kb downstream 0.5kb downstream 500 false Chr15: 4313072-4313571 Glycine max
Glyma.15G054900 1.0kb upstream 1.0kb upstream 5614 true Chr15: 4307458-4313071 Glycine max
Glyma.15G054900 1.0kb upstream 1.0kb upstream 1000 false Chr15: 4307458-4308457 Glycine max
Glyma.15G054900 1.0kb downstream 1.0kb downstream 5614 true Chr15: 4308458-4314071 Glycine max
Glyma.15G054900 1.0kb downstream 1.0kb downstream 1000 false Chr15: 4313072-4314071 Glycine max
Glyma.15G054900 2.0kb upstream 2.0kb upstream 6614 true Chr15: 4306458-4313071 Glycine max
Glyma.15G054900 2.0kb upstream 2.0kb upstream 2000 false Chr15: 4306458-4308457 Glycine max
Glyma.15G054900 2.0kb downstream 2.0kb downstream 6614 true Chr15: 4308458-4315071 Glycine max
Glyma.15G054900 2.0kb downstream 2.0kb downstream 2000 false Chr15: 4313072-4315071 Glycine max
Glyma.15G054900 5.0kb upstream 5.0kb upstream 9614 true Chr15: 4303458-4313071 Glycine max
Glyma.15G054900 5.0kb upstream 5.0kb upstream 5000 false Chr15: 4303458-4308457 Glycine max
Glyma.15G054900 5.0kb downstream 5.0kb downstream 9614 true Chr15: 4308458-4318071 Glycine max
Glyma.15G054900 5.0kb downstream 5.0kb downstream 5000 false Chr15: 4313072-4318071 Glycine max
Glyma.15G054900 10.0kb upstream 10.0kb upstream 14614 true Chr15: 4298458-4313071 Glycine max
Glyma.15G054900 10.0kb upstream 10.0kb upstream 10000 false Chr15: 4298458-4308457 Glycine max
Glyma.15G054900 10.0kb downstream 10.0kb downstream 14614 true Chr15: 4308458-4323071 Glycine max
Glyma.15G054900 10.0kb downstream 10.0kb downstream 10000 false Chr15: 4313072-4323071 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299977 5265 Fabidae View MSA
124060952 5270 Rosid View MSA
123740038 5271 Pentapetalae View MSA
122790174 5272 Eudicot View MSA
122042989 5273 Angiosperm View MSA
121345070 5274 Embryophyte View MSA
123423972 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.68052 0.0 13.9752   High
cufflinks 2.88558 0.0 9.22239    
cufflinks 4.09504 0.0 12.396   High
cufflinks 2.74214 0.0 8.81419    
cufflinks 3.03115 0.0 9.6298    
cufflinks 3.20392 0.0 10.0674    
cufflinks 2.08456 0.0 6.97765   Low
cufflinks 3.36335 0.0 10.5107    
cufflinks 2.7538 0.0 8.85356    
cufflinks 0.956       Low
cufflinks 1.4        
cufflinks 1.482        
cufflinks 1.402        
cufflinks 1.507        
cufflinks 1.295        
cufflinks 1.121       Low
cufflinks 1.426        
cufflinks 1.539        
cufflinks 1.719       High
cufflinks 1.282        
cufflinks 1.507        
cufflinks 1.311        
cufflinks 1.357        
cufflinks 1.88       High
cufflinks 1.135       Low
cufflinks 1.477        

0 Strain