Gene : Glyma.15G078000 G. max Wm82.a2.v1
Defline:  (1 of 3) 2.1.1.220 - tRNA (adenine(58)-N(1))-methyltransferase / tRNA m(1)A(58) methyltransferase Genomic Order:  780
Name:  ? Glyma.15G078000 Secondary Identifier:  ? PAC:30496215
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6829 Glycine max pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G078000 0.5kb upstream 0.5kb upstream 3034 true Chr15: 6002091-6005124 Glycine max
Glyma.15G078000 0.5kb upstream 0.5kb upstream 500 false Chr15: 6004625-6005124 Glycine max
Glyma.15G078000 0.5kb downstream 0.5kb downstream 3034 true Chr15: 6001591-6004624 Glycine max
Glyma.15G078000 0.5kb downstream 0.5kb downstream 500 false Chr15: 6001591-6002090 Glycine max
Glyma.15G078000 1.0kb upstream 1.0kb upstream 3534 true Chr15: 6002091-6005624 Glycine max
Glyma.15G078000 1.0kb upstream 1.0kb upstream 1000 false Chr15: 6004625-6005624 Glycine max
Glyma.15G078000 1.0kb downstream 1.0kb downstream 3534 true Chr15: 6001091-6004624 Glycine max
Glyma.15G078000 1.0kb downstream 1.0kb downstream 1000 false Chr15: 6001091-6002090 Glycine max
Glyma.15G078000 2.0kb upstream 2.0kb upstream 4534 true Chr15: 6002091-6006624 Glycine max
Glyma.15G078000 2.0kb upstream 2.0kb upstream 2000 false Chr15: 6004625-6006624 Glycine max
Glyma.15G078000 2.0kb downstream 2.0kb downstream 4534 true Chr15: 6000091-6004624 Glycine max
Glyma.15G078000 2.0kb downstream 2.0kb downstream 2000 false Chr15: 6000091-6002090 Glycine max
Glyma.15G078000 5.0kb upstream 5.0kb upstream 7534 true Chr15: 6002091-6009624 Glycine max
Glyma.15G078000 5.0kb upstream 5.0kb upstream 5000 false Chr15: 6004625-6009624 Glycine max
Glyma.15G078000 5.0kb downstream 5.0kb downstream 7534 true Chr15: 5997091-6004624 Glycine max
Glyma.15G078000 5.0kb downstream 5.0kb downstream 5000 false Chr15: 5997091-6002090 Glycine max
Glyma.15G078000 10.0kb upstream 10.0kb upstream 12534 true Chr15: 6002091-6014624 Glycine max
Glyma.15G078000 10.0kb upstream 10.0kb upstream 10000 false Chr15: 6004625-6014624 Glycine max
Glyma.15G078000 10.0kb downstream 10.0kb downstream 12534 true Chr15: 5992091-6004624 Glycine max
Glyma.15G078000 10.0kb downstream 10.0kb downstream 10000 false Chr15: 5992091-6002090 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307322 5265 Fabidae View MSA
124067339 5270 Rosid View MSA
123740177 5271 Pentapetalae View MSA
122793445 5272 Eudicot View MSA
122045272 5273 Angiosperm View MSA
121345508 5274 Embryophyte View MSA
123423922 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.97799 0.0 24.6207    
cufflinks 7.14343 0.0 19.9657    
cufflinks 5.17129 0.0 14.9476   Low
cufflinks 11.2545 0.0 30.4136   High
cufflinks 11.4671 0.0 30.9701   High
cufflinks 10.4573 0.0 28.3709    
cufflinks 6.51941 0.0 18.4168    
cufflinks 9.37917 0.0 25.6219    
cufflinks 7.2455 0.0 20.2061    
cufflinks 6.434        
cufflinks 3.501       Low
cufflinks 5.475        
cufflinks 8.815     High High
cufflinks 11.204     High High
cufflinks 2.398       Low
cufflinks 5.725        
cufflinks 5.745        
cufflinks 6.679        
cufflinks 6.443        
cufflinks 4.771        
cufflinks 3.707       Low
cufflinks 5.733        
cufflinks 5.65        
cufflinks 4.43        
cufflinks 4.432        
cufflinks 4.989        

0 Strain