Gene : Glyma.15G079000 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12599:SF2 - PCD/DCOH-LIKE PROTEIN 2 Genomic Order:  790
Name:  ? Glyma.15G079000 Secondary Identifier:  ? PAC:30496682
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G079000 0.5kb upstream 0.5kb upstream 4167 true Chr15: 6073322-6077488 Glycine max
Glyma.15G079000 0.5kb upstream 0.5kb upstream 500 false Chr15: 6076989-6077488 Glycine max
Glyma.15G079000 0.5kb downstream 0.5kb downstream 4167 true Chr15: 6072822-6076988 Glycine max
Glyma.15G079000 0.5kb downstream 0.5kb downstream 500 false Chr15: 6072822-6073321 Glycine max
Glyma.15G079000 1.0kb upstream 1.0kb upstream 4667 true Chr15: 6073322-6077988 Glycine max
Glyma.15G079000 1.0kb upstream 1.0kb upstream 1000 false Chr15: 6076989-6077988 Glycine max
Glyma.15G079000 1.0kb downstream 1.0kb downstream 4667 true Chr15: 6072322-6076988 Glycine max
Glyma.15G079000 1.0kb downstream 1.0kb downstream 1000 false Chr15: 6072322-6073321 Glycine max
Glyma.15G079000 2.0kb upstream 2.0kb upstream 5667 true Chr15: 6073322-6078988 Glycine max
Glyma.15G079000 2.0kb upstream 2.0kb upstream 2000 false Chr15: 6076989-6078988 Glycine max
Glyma.15G079000 2.0kb downstream 2.0kb downstream 5667 true Chr15: 6071322-6076988 Glycine max
Glyma.15G079000 2.0kb downstream 2.0kb downstream 2000 false Chr15: 6071322-6073321 Glycine max
Glyma.15G079000 5.0kb upstream 5.0kb upstream 8667 true Chr15: 6073322-6081988 Glycine max
Glyma.15G079000 5.0kb upstream 5.0kb upstream 5000 false Chr15: 6076989-6081988 Glycine max
Glyma.15G079000 5.0kb downstream 5.0kb downstream 8667 true Chr15: 6068322-6076988 Glycine max
Glyma.15G079000 5.0kb downstream 5.0kb downstream 5000 false Chr15: 6068322-6073321 Glycine max
Glyma.15G079000 10.0kb upstream 10.0kb upstream 13667 true Chr15: 6073322-6086988 Glycine max
Glyma.15G079000 10.0kb upstream 10.0kb upstream 10000 false Chr15: 6076989-6086988 Glycine max
Glyma.15G079000 10.0kb downstream 10.0kb downstream 13667 true Chr15: 6063322-6076988 Glycine max
Glyma.15G079000 10.0kb downstream 10.0kb downstream 10000 false Chr15: 6063322-6073321 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310533 5265 Fabidae View MSA
124068632 5270 Rosid View MSA
123742816 5271 Pentapetalae View MSA
122797926 5272 Eudicot View MSA
122046446 5273 Angiosperm View MSA
121348467 5274 Embryophyte View MSA
123427509 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.68794 0.0 16.264    
cufflinks 2.20857 0.0 18.2093    
cufflinks 1.30268 0.0 12.0043   Low
cufflinks 1.27564 0.0 11.6749   Low
cufflinks 1.68628 0.0 12.9634    
cufflinks 2.76856 0.0 18.9628   High
cufflinks 1.74642 0.0 15.5537    
cufflinks 1.86456 0.0 14.0677    
cufflinks 1.39327 0.0 9.1224    
cufflinks 0.059     Low  
cufflinks 0.09        
cufflinks 0.056     Low  
cufflinks 0.096        
cufflinks 0.117       High
cufflinks 0.079        
cufflinks 0.073     Low  
cufflinks 0.026     Low Low
cufflinks 0.053     Low  
cufflinks 0.123       High
cufflinks 0.061     Low  
cufflinks 0.063        
cufflinks 0.09     Low  
cufflinks 0.118       High
cufflinks 0.085        
cufflinks 0.066     Low  
cufflinks 0.053     Low  

0 Strain