Gene : Glyma.15G072800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12879 - SPHINGOLIPID DELTA 4 DESATURASE/C-4 HYDROXYLASE PROTEIN DES2 Genomic Order:  728
Name:  ? Glyma.15G072800 Secondary Identifier:  ? PAC:30497688
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G072800 0.5kb upstream 0.5kb upstream 2898 true Chr15: 5579222-5582119 Glycine max
Glyma.15G072800 0.5kb upstream 0.5kb upstream 500 false Chr15: 5579222-5579721 Glycine max
Glyma.15G072800 0.5kb downstream 0.5kb downstream 2898 true Chr15: 5579722-5582619 Glycine max
Glyma.15G072800 0.5kb downstream 0.5kb downstream 500 false Chr15: 5582120-5582619 Glycine max
Glyma.15G072800 1.0kb upstream 1.0kb upstream 3398 true Chr15: 5578722-5582119 Glycine max
Glyma.15G072800 1.0kb upstream 1.0kb upstream 1000 false Chr15: 5578722-5579721 Glycine max
Glyma.15G072800 1.0kb downstream 1.0kb downstream 3398 true Chr15: 5579722-5583119 Glycine max
Glyma.15G072800 1.0kb downstream 1.0kb downstream 1000 false Chr15: 5582120-5583119 Glycine max
Glyma.15G072800 2.0kb upstream 2.0kb upstream 4398 true Chr15: 5577722-5582119 Glycine max
Glyma.15G072800 2.0kb upstream 2.0kb upstream 2000 false Chr15: 5577722-5579721 Glycine max
Glyma.15G072800 2.0kb downstream 2.0kb downstream 4398 true Chr15: 5579722-5584119 Glycine max
Glyma.15G072800 2.0kb downstream 2.0kb downstream 2000 false Chr15: 5582120-5584119 Glycine max
Glyma.15G072800 5.0kb upstream 5.0kb upstream 7398 true Chr15: 5574722-5582119 Glycine max
Glyma.15G072800 5.0kb upstream 5.0kb upstream 5000 false Chr15: 5574722-5579721 Glycine max
Glyma.15G072800 5.0kb downstream 5.0kb downstream 7398 true Chr15: 5579722-5587119 Glycine max
Glyma.15G072800 5.0kb downstream 5.0kb downstream 5000 false Chr15: 5582120-5587119 Glycine max
Glyma.15G072800 10.0kb upstream 10.0kb upstream 12398 true Chr15: 5569722-5582119 Glycine max
Glyma.15G072800 10.0kb upstream 10.0kb upstream 10000 false Chr15: 5569722-5579721 Glycine max
Glyma.15G072800 10.0kb downstream 10.0kb downstream 12398 true Chr15: 5579722-5592119 Glycine max
Glyma.15G072800 10.0kb downstream 10.0kb downstream 10000 false Chr15: 5582120-5592119 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305345 5265 Fabidae View MSA
124069384 5270 Rosid View MSA
123741944 5271 Pentapetalae View MSA
122796748 5272 Eudicot View MSA
122048709 5273 Angiosperm View MSA
121348431 5274 Embryophyte View MSA
123425717 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.67961 0.0 5.85413   Low
cufflinks 5.71013 0.0 16.9616    
cufflinks 121.347 0.0 372.467 High High
cufflinks 5.67185 0.0 16.8479    
cufflinks 14.6019 0.0 39.5305    
cufflinks 11.9853 0.0 32.8189    
cufflinks 9.15504 0.0 25.7206    
cufflinks 8.74765 0.0 24.6101    
cufflinks 11.8371 0.0 32.4296    
cufflinks 2.103        
cufflinks 1.832        
cufflinks 18.336     High High
cufflinks 8.966     High High
cufflinks 15.912     High High
cufflinks 3.459        
cufflinks 1.586        
cufflinks 1.878        
cufflinks 20.916     High High
cufflinks 3.173        
cufflinks 1.039        
cufflinks 1.265        
cufflinks 1.224        
cufflinks 1.894        
cufflinks 0.769       Low
cufflinks 1.021        
cufflinks 2.903        

0 Strain