Gene : Glyma.15G073300 G. max Wm82.a2.v1
Defline:  (1 of 24) PF01535//PF13812 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  733
Name:  ? Glyma.15G073300 Secondary Identifier:  ? PAC:30498176
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G073300 0.5kb upstream 0.5kb upstream 4418 true Chr15: 5615008-5619425 Glycine max
Glyma.15G073300 0.5kb upstream 0.5kb upstream 500 false Chr15: 5618926-5619425 Glycine max
Glyma.15G073300 0.5kb downstream 0.5kb downstream 4418 true Chr15: 5614508-5618925 Glycine max
Glyma.15G073300 0.5kb downstream 0.5kb downstream 500 false Chr15: 5614508-5615007 Glycine max
Glyma.15G073300 1.0kb upstream 1.0kb upstream 4918 true Chr15: 5615008-5619925 Glycine max
Glyma.15G073300 1.0kb upstream 1.0kb upstream 1000 false Chr15: 5618926-5619925 Glycine max
Glyma.15G073300 1.0kb downstream 1.0kb downstream 4918 true Chr15: 5614008-5618925 Glycine max
Glyma.15G073300 1.0kb downstream 1.0kb downstream 1000 false Chr15: 5614008-5615007 Glycine max
Glyma.15G073300 2.0kb upstream 2.0kb upstream 5918 true Chr15: 5615008-5620925 Glycine max
Glyma.15G073300 2.0kb upstream 2.0kb upstream 2000 false Chr15: 5618926-5620925 Glycine max
Glyma.15G073300 2.0kb downstream 2.0kb downstream 5918 true Chr15: 5613008-5618925 Glycine max
Glyma.15G073300 2.0kb downstream 2.0kb downstream 2000 false Chr15: 5613008-5615007 Glycine max
Glyma.15G073300 5.0kb upstream 5.0kb upstream 8918 true Chr15: 5615008-5623925 Glycine max
Glyma.15G073300 5.0kb upstream 5.0kb upstream 5000 false Chr15: 5618926-5623925 Glycine max
Glyma.15G073300 5.0kb downstream 5.0kb downstream 8918 true Chr15: 5610008-5618925 Glycine max
Glyma.15G073300 5.0kb downstream 5.0kb downstream 5000 false Chr15: 5610008-5615007 Glycine max
Glyma.15G073300 10.0kb upstream 10.0kb upstream 13918 true Chr15: 5615008-5628925 Glycine max
Glyma.15G073300 10.0kb upstream 10.0kb upstream 10000 false Chr15: 5618926-5628925 Glycine max
Glyma.15G073300 10.0kb downstream 10.0kb downstream 13918 true Chr15: 5605008-5618925 Glycine max
Glyma.15G073300 10.0kb downstream 10.0kb downstream 10000 false Chr15: 5605008-5615007 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300593 5265 Fabidae View MSA
124072029 5270 Rosid View MSA
123744765 5271 Pentapetalae View MSA
122790014 5272 Eudicot View MSA
122049142 5273 Angiosperm View MSA
121311265 5274 Embryophyte View MSA
123348580 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.62813 0.0 10.518    
cufflinks 4.29189 0.0 12.2045    
cufflinks 2.68505 0.0 8.08918   Low
cufflinks 2.98361 0.0 8.86361    
cufflinks 4.07916 0.0 11.6653    
cufflinks 3.57511 0.0 10.3882    
cufflinks 4.9759 0.0 13.938   High
cufflinks 2.47791 0.0 7.55656   Low
cufflinks 2.92367 0.0 8.7235    
cufflinks 1.569        
cufflinks 0.623       Low
cufflinks 2.109        
cufflinks 3.212       High
cufflinks 3.516       High
cufflinks 0.804       Low
cufflinks 2.219        
cufflinks 0.388       Low
cufflinks 2.657        
cufflinks 2.785        
cufflinks 2.59        
cufflinks 0.77       Low
cufflinks 2.411        
cufflinks 2.91        
cufflinks 0.924        
cufflinks 2.156        
cufflinks 0.824        

0 Strain