Gene : Glyma.15G123600 G. max Wm82.a2.v1
Defline:  (1 of 10) PTHR22847//PTHR22847:SF478 - WD40 REPEAT PROTEIN Genomic Order:  1236
Name:  ? Glyma.15G123600 Secondary Identifier:  ? PAC:30498701
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G123600 0.5kb upstream 0.5kb upstream 5924 true Chr15: 9814677-9820600 Glycine max
Glyma.15G123600 0.5kb upstream 0.5kb upstream 500 false Chr15: 9814677-9815176 Glycine max
Glyma.15G123600 0.5kb downstream 0.5kb downstream 5924 true Chr15: 9815177-9821100 Glycine max
Glyma.15G123600 0.5kb downstream 0.5kb downstream 500 false Chr15: 9820601-9821100 Glycine max
Glyma.15G123600 1.0kb upstream 1.0kb upstream 6424 true Chr15: 9814177-9820600 Glycine max
Glyma.15G123600 1.0kb upstream 1.0kb upstream 1000 false Chr15: 9814177-9815176 Glycine max
Glyma.15G123600 1.0kb downstream 1.0kb downstream 6424 true Chr15: 9815177-9821600 Glycine max
Glyma.15G123600 1.0kb downstream 1.0kb downstream 1000 false Chr15: 9820601-9821600 Glycine max
Glyma.15G123600 2.0kb upstream 2.0kb upstream 7424 true Chr15: 9813177-9820600 Glycine max
Glyma.15G123600 2.0kb upstream 2.0kb upstream 2000 false Chr15: 9813177-9815176 Glycine max
Glyma.15G123600 2.0kb downstream 2.0kb downstream 7424 true Chr15: 9815177-9822600 Glycine max
Glyma.15G123600 2.0kb downstream 2.0kb downstream 2000 false Chr15: 9820601-9822600 Glycine max
Glyma.15G123600 5.0kb upstream 5.0kb upstream 10424 true Chr15: 9810177-9820600 Glycine max
Glyma.15G123600 5.0kb upstream 5.0kb upstream 5000 false Chr15: 9810177-9815176 Glycine max
Glyma.15G123600 5.0kb downstream 5.0kb downstream 10424 true Chr15: 9815177-9825600 Glycine max
Glyma.15G123600 5.0kb downstream 5.0kb downstream 5000 false Chr15: 9820601-9825600 Glycine max
Glyma.15G123600 10.0kb upstream 10.0kb upstream 15424 true Chr15: 9805177-9820600 Glycine max
Glyma.15G123600 10.0kb upstream 10.0kb upstream 10000 false Chr15: 9805177-9815176 Glycine max
Glyma.15G123600 10.0kb downstream 10.0kb downstream 15424 true Chr15: 9815177-9830600 Glycine max
Glyma.15G123600 10.0kb downstream 10.0kb downstream 10000 false Chr15: 9820601-9830600 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041408 5273 Angiosperm View MSA
122296360 5265 Fabidae View MSA
124065588 5270 Rosid View MSA
123745758 5271 Pentapetalae View MSA
122795577 5272 Eudicot View MSA
121348063 5274 Embryophyte View MSA
123428605 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.7765 0.0 75.2431 High  
cufflinks 17.6447 0.0 47.0892    
cufflinks 40.4448 0.0 113.255 High High
cufflinks 21.0789 0.0 56.4405 High  
cufflinks 11.7952 0.0 31.65   Low
cufflinks 24.2579 0.0 65.2627 High  
cufflinks 19.0014 0.0 50.7379    
cufflinks 23.1387 0.0 62.1463 High  
cufflinks 19.7267 0.0 52.7314 High  
cufflinks 6.697       Low
cufflinks 27.838     High High
cufflinks 11.717     High  
cufflinks 6.13       Low
cufflinks 5.192       Low
cufflinks 16.803     High  
cufflinks 11.082     High  
cufflinks 5.446       Low
cufflinks 8.41     High  
cufflinks 8.549     High  
cufflinks 13.943     High  
cufflinks 20.153     High High
cufflinks 13.015     High  
cufflinks 7.915     High  
cufflinks 23.364     High High
cufflinks 13.667     High  
cufflinks 11.938     High  

0 Strain