Gene : Glyma.15G116300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31636:SF45 - SCARECROW-LIKE PROTEIN 13 Genomic Order:  1163
Name:  ? Glyma.15G116300 Secondary Identifier:  ? PAC:30496611
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G116300 0.5kb upstream 0.5kb upstream 4551 true Chr15: 9141617-9146167 Glycine max
Glyma.15G116300 0.5kb upstream 0.5kb upstream 500 false Chr15: 9145668-9146167 Glycine max
Glyma.15G116300 0.5kb downstream 0.5kb downstream 4551 true Chr15: 9141117-9145667 Glycine max
Glyma.15G116300 0.5kb downstream 0.5kb downstream 500 false Chr15: 9141117-9141616 Glycine max
Glyma.15G116300 1.0kb upstream 1.0kb upstream 5051 true Chr15: 9141617-9146667 Glycine max
Glyma.15G116300 1.0kb upstream 1.0kb upstream 1000 false Chr15: 9145668-9146667 Glycine max
Glyma.15G116300 1.0kb downstream 1.0kb downstream 5051 true Chr15: 9140617-9145667 Glycine max
Glyma.15G116300 1.0kb downstream 1.0kb downstream 1000 false Chr15: 9140617-9141616 Glycine max
Glyma.15G116300 2.0kb upstream 2.0kb upstream 6051 true Chr15: 9141617-9147667 Glycine max
Glyma.15G116300 2.0kb upstream 2.0kb upstream 2000 false Chr15: 9145668-9147667 Glycine max
Glyma.15G116300 2.0kb downstream 2.0kb downstream 6051 true Chr15: 9139617-9145667 Glycine max
Glyma.15G116300 2.0kb downstream 2.0kb downstream 2000 false Chr15: 9139617-9141616 Glycine max
Glyma.15G116300 5.0kb upstream 5.0kb upstream 9051 true Chr15: 9141617-9150667 Glycine max
Glyma.15G116300 5.0kb upstream 5.0kb upstream 5000 false Chr15: 9145668-9150667 Glycine max
Glyma.15G116300 5.0kb downstream 5.0kb downstream 9051 true Chr15: 9136617-9145667 Glycine max
Glyma.15G116300 5.0kb downstream 5.0kb downstream 5000 false Chr15: 9136617-9141616 Glycine max
Glyma.15G116300 10.0kb upstream 10.0kb upstream 14051 true Chr15: 9141617-9155667 Glycine max
Glyma.15G116300 10.0kb upstream 10.0kb upstream 10000 false Chr15: 9145668-9155667 Glycine max
Glyma.15G116300 10.0kb downstream 10.0kb downstream 14051 true Chr15: 9131617-9145667 Glycine max
Glyma.15G116300 10.0kb downstream 10.0kb downstream 10000 false Chr15: 9131617-9141616 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310892 5265 Fabidae View MSA
124063713 5270 Rosid View MSA
123752771 5271 Pentapetalae View MSA
122794202 5272 Eudicot View MSA
122051595 5273 Angiosperm View MSA
121350442 5274 Embryophyte View MSA
123381734 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.5819 0.0 28.9182   High
cufflinks 2.16338 0.0 7.07048    
cufflinks 6.79274 0.0 21.2763    
cufflinks 2.71497 0.0 8.24039    
cufflinks 5.38928 0.0 17.7133    
cufflinks 7.35377 0.0 22.9976    
cufflinks 1.13457 0.0 4.43961   Low
cufflinks 2.93122 0.0 11.1741    
cufflinks 8.73464 0.0 26.5585    
cufflinks 4.855        
cufflinks 30.409     High High
cufflinks 6.92        
cufflinks 3.063        
cufflinks 1.198       Low
cufflinks 29.904     High High
cufflinks 1.61        
cufflinks 30.49     High High
cufflinks 4.457        
cufflinks 1.569       Low
cufflinks 1.732        
cufflinks 34.444     High High
cufflinks 2.007        
cufflinks 2.203        
cufflinks 26.829     High High
cufflinks 1.577       Low
cufflinks 24.301     High High

0 Strain