Gene : Glyma.15G130100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR19384:SF54 - FERREDOXIN--NADP REDUCTASE, ROOT ISOZYME 1, CHLOROPLASTIC-RELATED Genomic Order:  1301
Name:  ? Glyma.15G130100 Secondary Identifier:  ? PAC:30495953
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PHOTOALL-PWY Glycine max pathologic  
Gmax PWY-101 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G130100 0.5kb upstream 0.5kb upstream 8131 true Chr15: 10444300-10452430 Glycine max
Glyma.15G130100 0.5kb upstream 0.5kb upstream 500 false Chr15: 10444300-10444799 Glycine max
Glyma.15G130100 0.5kb downstream 0.5kb downstream 8131 true Chr15: 10444800-10452930 Glycine max
Glyma.15G130100 0.5kb downstream 0.5kb downstream 500 false Chr15: 10452431-10452930 Glycine max
Glyma.15G130100 1.0kb upstream 1.0kb upstream 8631 true Chr15: 10443800-10452430 Glycine max
Glyma.15G130100 1.0kb upstream 1.0kb upstream 1000 false Chr15: 10443800-10444799 Glycine max
Glyma.15G130100 1.0kb downstream 1.0kb downstream 8631 true Chr15: 10444800-10453430 Glycine max
Glyma.15G130100 1.0kb downstream 1.0kb downstream 1000 false Chr15: 10452431-10453430 Glycine max
Glyma.15G130100 2.0kb upstream 2.0kb upstream 9631 true Chr15: 10442800-10452430 Glycine max
Glyma.15G130100 2.0kb upstream 2.0kb upstream 2000 false Chr15: 10442800-10444799 Glycine max
Glyma.15G130100 2.0kb downstream 2.0kb downstream 9631 true Chr15: 10444800-10454430 Glycine max
Glyma.15G130100 2.0kb downstream 2.0kb downstream 2000 false Chr15: 10452431-10454430 Glycine max
Glyma.15G130100 5.0kb upstream 5.0kb upstream 12631 true Chr15: 10439800-10452430 Glycine max
Glyma.15G130100 5.0kb upstream 5.0kb upstream 5000 false Chr15: 10439800-10444799 Glycine max
Glyma.15G130100 5.0kb downstream 5.0kb downstream 12631 true Chr15: 10444800-10457430 Glycine max
Glyma.15G130100 5.0kb downstream 5.0kb downstream 5000 false Chr15: 10452431-10457430 Glycine max
Glyma.15G130100 10.0kb upstream 10.0kb upstream 17631 true Chr15: 10434800-10452430 Glycine max
Glyma.15G130100 10.0kb upstream 10.0kb upstream 10000 false Chr15: 10434800-10444799 Glycine max
Glyma.15G130100 10.0kb downstream 10.0kb downstream 17631 true Chr15: 10444800-10462430 Glycine max
Glyma.15G130100 10.0kb downstream 10.0kb downstream 10000 false Chr15: 10452431-10462430 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303230 5265 Fabidae View MSA
124064755 5270 Rosid View MSA
123736625 5271 Pentapetalae View MSA
122790491 5272 Eudicot View MSA
122045006 5273 Angiosperm View MSA
121347443 5274 Embryophyte View MSA
123424825 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.0201 0.0 50.7726   Low
cufflinks 22.0332 0.0 58.9948 High  
cufflinks 19.1192 0.0 51.0652   Low
cufflinks 21.9569 0.0 58.7952 High  
cufflinks 38.139 0.0 105.293 High High
cufflinks 40.3308 0.0 112.056 High High
cufflinks 21.2916 0.0 56.9345    
cufflinks 33.4326 0.0 91.5466 High  
cufflinks 37.4548 0.0 103.422 High High
cufflinks 8.895     High High
cufflinks 3.28       Low
cufflinks 5.597        
cufflinks 11.06     High High
cufflinks 11.355     High High
cufflinks 6.731     High  
cufflinks 3.43        
cufflinks 7.357     High  
cufflinks 7.296     High  
cufflinks 5.32        
cufflinks 2.584       Low
cufflinks 4.67        
cufflinks 3.148       Low
cufflinks 4.257        
cufflinks 4.783        
cufflinks 3.029       Low
cufflinks 10.136     High High

0 Strain