Gene : Glyma.15G170600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR22942:SF1 - MITOCHONDRIAL DNA REPAIR PROTEIN RECA HOMOLOG Genomic Order:  1706
Name:  ? Glyma.15G170600 Secondary Identifier:  ? PAC:30498848
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G170600 0.5kb upstream 0.5kb upstream 9961 true Chr15: 15497614-15507574 Glycine max
Glyma.15G170600 0.5kb upstream 0.5kb upstream 500 false Chr15: 15507075-15507574 Glycine max
Glyma.15G170600 0.5kb downstream 0.5kb downstream 9961 true Chr15: 15497114-15507074 Glycine max
Glyma.15G170600 0.5kb downstream 0.5kb downstream 500 false Chr15: 15497114-15497613 Glycine max
Glyma.15G170600 1.0kb upstream 1.0kb upstream 10461 true Chr15: 15497614-15508074 Glycine max
Glyma.15G170600 1.0kb upstream 1.0kb upstream 1000 false Chr15: 15507075-15508074 Glycine max
Glyma.15G170600 1.0kb downstream 1.0kb downstream 10461 true Chr15: 15496614-15507074 Glycine max
Glyma.15G170600 1.0kb downstream 1.0kb downstream 1000 false Chr15: 15496614-15497613 Glycine max
Glyma.15G170600 2.0kb upstream 2.0kb upstream 11461 true Chr15: 15497614-15509074 Glycine max
Glyma.15G170600 2.0kb upstream 2.0kb upstream 2000 false Chr15: 15507075-15509074 Glycine max
Glyma.15G170600 2.0kb downstream 2.0kb downstream 11461 true Chr15: 15495614-15507074 Glycine max
Glyma.15G170600 2.0kb downstream 2.0kb downstream 2000 false Chr15: 15495614-15497613 Glycine max
Glyma.15G170600 5.0kb upstream 5.0kb upstream 14461 true Chr15: 15497614-15512074 Glycine max
Glyma.15G170600 5.0kb upstream 5.0kb upstream 5000 false Chr15: 15507075-15512074 Glycine max
Glyma.15G170600 5.0kb downstream 5.0kb downstream 14461 true Chr15: 15492614-15507074 Glycine max
Glyma.15G170600 5.0kb downstream 5.0kb downstream 5000 false Chr15: 15492614-15497613 Glycine max
Glyma.15G170600 10.0kb upstream 10.0kb upstream 19461 true Chr15: 15497614-15517074 Glycine max
Glyma.15G170600 10.0kb upstream 10.0kb upstream 10000 false Chr15: 15507075-15517074 Glycine max
Glyma.15G170600 10.0kb downstream 10.0kb downstream 19461 true Chr15: 15487614-15507074 Glycine max
Glyma.15G170600 10.0kb downstream 10.0kb downstream 10000 false Chr15: 15487614-15497613 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297351 5265 Fabidae View MSA
124060910 5270 Rosid View MSA
123743404 5271 Pentapetalae View MSA
122790818 5272 Eudicot View MSA
122045748 5273 Angiosperm View MSA
121351318 5274 Embryophyte View MSA
123382118 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.87099 0.0 14.3987    
cufflinks 5.0172 0.0 16.7001   High
cufflinks 3.93479 0.0 16.8209    
cufflinks 2.4912 0.0 10.1597    
cufflinks 4.10066 0.0 18.0382    
cufflinks 3.04968 0.0 14.0869    
cufflinks 2.12978 0.0 9.20503   Low
cufflinks 3.0316 0.0 14.66    
cufflinks 3.06008 0.0 14.4996    
cufflinks 0.129        
cufflinks 0.04     Low Low
cufflinks 0.192        
cufflinks 0.245       High
cufflinks 0.315       High
cufflinks 0.037     Low Low
cufflinks 0.128        
cufflinks 0.074        
cufflinks 0.158        
cufflinks 0.319       High
cufflinks 0.12        
cufflinks 0.071        
cufflinks 0.154        
cufflinks 0.265       High
cufflinks 0.1        
cufflinks 0.137        
cufflinks 0.066     Low  

0 Strain