Gene : Glyma.15G170800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12919:SF20 - 28S RIBOSOMAL PROTEIN S16, MITOCHONDRIAL Genomic Order:  1708
Name:  ? Glyma.15G170800 Secondary Identifier:  ? PAC:30497341
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G170800 0.5kb upstream 0.5kb upstream 2148 true Chr15: 15537229-15539376 Glycine max
Glyma.15G170800 0.5kb upstream 0.5kb upstream 500 false Chr15: 15537229-15537728 Glycine max
Glyma.15G170800 0.5kb downstream 0.5kb downstream 2148 true Chr15: 15537729-15539876 Glycine max
Glyma.15G170800 0.5kb downstream 0.5kb downstream 500 false Chr15: 15539377-15539876 Glycine max
Glyma.15G170800 1.0kb upstream 1.0kb upstream 2648 true Chr15: 15536729-15539376 Glycine max
Glyma.15G170800 1.0kb upstream 1.0kb upstream 1000 false Chr15: 15536729-15537728 Glycine max
Glyma.15G170800 1.0kb downstream 1.0kb downstream 2648 true Chr15: 15537729-15540376 Glycine max
Glyma.15G170800 1.0kb downstream 1.0kb downstream 1000 false Chr15: 15539377-15540376 Glycine max
Glyma.15G170800 2.0kb upstream 2.0kb upstream 3648 true Chr15: 15535729-15539376 Glycine max
Glyma.15G170800 2.0kb upstream 2.0kb upstream 2000 false Chr15: 15535729-15537728 Glycine max
Glyma.15G170800 2.0kb downstream 2.0kb downstream 3648 true Chr15: 15537729-15541376 Glycine max
Glyma.15G170800 2.0kb downstream 2.0kb downstream 2000 false Chr15: 15539377-15541376 Glycine max
Glyma.15G170800 5.0kb upstream 5.0kb upstream 6648 true Chr15: 15532729-15539376 Glycine max
Glyma.15G170800 5.0kb upstream 5.0kb upstream 5000 false Chr15: 15532729-15537728 Glycine max
Glyma.15G170800 5.0kb downstream 5.0kb downstream 6648 true Chr15: 15537729-15544376 Glycine max
Glyma.15G170800 5.0kb downstream 5.0kb downstream 5000 false Chr15: 15539377-15544376 Glycine max
Glyma.15G170800 10.0kb upstream 10.0kb upstream 11648 true Chr15: 15527729-15539376 Glycine max
Glyma.15G170800 10.0kb upstream 10.0kb upstream 10000 false Chr15: 15527729-15537728 Glycine max
Glyma.15G170800 10.0kb downstream 10.0kb downstream 11648 true Chr15: 15537729-15549376 Glycine max
Glyma.15G170800 10.0kb downstream 10.0kb downstream 10000 false Chr15: 15539377-15549376 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299837 5265 Fabidae View MSA
124065829 5270 Rosid View MSA
123738502 5271 Pentapetalae View MSA
122792819 5272 Eudicot View MSA
122051162 5273 Angiosperm View MSA
121348917 5274 Embryophyte View MSA
123426601 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.9536 0.0 36.464    
cufflinks 14.98 0.0 41.5893    
cufflinks 9.31795 0.0 27.2446   Low
cufflinks 12.414 0.0 35.0842    
cufflinks 20.9131 0.0 56.6048 High  
cufflinks 14.9037 0.0 41.319    
cufflinks 27.4268 0.0 73.4747 High High
cufflinks 14.9149 0.0 41.3818    
cufflinks 17.4078 0.0 47.6885    
cufflinks 6.774        
cufflinks 1.703       Low
cufflinks 6.15        
cufflinks 14.068     High High
cufflinks 19.843     High High
cufflinks 2.821       Low
cufflinks 6.238        
cufflinks 3.449        
cufflinks 7.985     High  
cufflinks 6.772        
cufflinks 5.014        
cufflinks 3.005        
cufflinks 5.472        
cufflinks 6.706        
cufflinks 2.408       Low
cufflinks 5.579        
cufflinks 3.959        

0 Strain