Gene : Glyma.15G172200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13789:SF207 - LYCOPENE EPSILON CYCLASE, CHLOROPLASTIC Genomic Order:  1722
Name:  ? Glyma.15G172200 Secondary Identifier:  ? PAC:30499352
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CAROTENOID-PWY Glycine max pathologic  
Gmax PWY-5175 Glycine max pathologic  
Gmax PWY-5946 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G172200 0.5kb upstream 0.5kb upstream 8457 true Chr15: 15721386-15729842 Glycine max
Glyma.15G172200 0.5kb upstream 0.5kb upstream 500 false Chr15: 15721386-15721885 Glycine max
Glyma.15G172200 0.5kb downstream 0.5kb downstream 8457 true Chr15: 15721886-15730342 Glycine max
Glyma.15G172200 0.5kb downstream 0.5kb downstream 500 false Chr15: 15729843-15730342 Glycine max
Glyma.15G172200 1.0kb upstream 1.0kb upstream 8957 true Chr15: 15720886-15729842 Glycine max
Glyma.15G172200 1.0kb upstream 1.0kb upstream 1000 false Chr15: 15720886-15721885 Glycine max
Glyma.15G172200 1.0kb downstream 1.0kb downstream 8957 true Chr15: 15721886-15730842 Glycine max
Glyma.15G172200 1.0kb downstream 1.0kb downstream 1000 false Chr15: 15729843-15730842 Glycine max
Glyma.15G172200 2.0kb upstream 2.0kb upstream 9957 true Chr15: 15719886-15729842 Glycine max
Glyma.15G172200 2.0kb upstream 2.0kb upstream 2000 false Chr15: 15719886-15721885 Glycine max
Glyma.15G172200 2.0kb downstream 2.0kb downstream 9957 true Chr15: 15721886-15731842 Glycine max
Glyma.15G172200 2.0kb downstream 2.0kb downstream 2000 false Chr15: 15729843-15731842 Glycine max
Glyma.15G172200 5.0kb upstream 5.0kb upstream 12957 true Chr15: 15716886-15729842 Glycine max
Glyma.15G172200 5.0kb upstream 5.0kb upstream 5000 false Chr15: 15716886-15721885 Glycine max
Glyma.15G172200 5.0kb downstream 5.0kb downstream 12957 true Chr15: 15721886-15734842 Glycine max
Glyma.15G172200 5.0kb downstream 5.0kb downstream 5000 false Chr15: 15729843-15734842 Glycine max
Glyma.15G172200 10.0kb upstream 10.0kb upstream 17957 true Chr15: 15711886-15729842 Glycine max
Glyma.15G172200 10.0kb upstream 10.0kb upstream 10000 false Chr15: 15711886-15721885 Glycine max
Glyma.15G172200 10.0kb downstream 10.0kb downstream 17957 true Chr15: 15721886-15739842 Glycine max
Glyma.15G172200 10.0kb downstream 10.0kb downstream 10000 false Chr15: 15729843-15739842 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305319 5265 Fabidae View MSA
124068333 5270 Rosid View MSA
123739919 5271 Pentapetalae View MSA
122791667 5272 Eudicot View MSA
122041543 5273 Angiosperm View MSA
121345455 5274 Embryophyte View MSA
123424108 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.76825 0.0 5.74509    
cufflinks 8.83617 0.0 23.8913   High
cufflinks 1.79457 0.0 5.81518    
cufflinks 2.91576 0.0 8.82971    
cufflinks 0.670377 0.0 2.40198    
cufflinks 0.570619 0.0 2.06705    
cufflinks 2.25867 0.0 7.09031    
cufflinks 1.40472 0.0 4.71083    
cufflinks 0.0595382 0.0 0.238361 Low Low
cufflinks 1.47        
cufflinks 0.018     Low  
cufflinks 1.303        
cufflinks 0.034     Low  
cufflinks 0.074        
cufflinks 0.012     Low Low
cufflinks 10.123     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.728        
cufflinks 2.973        
cufflinks 12.489     High High
cufflinks 0.005     Low Low
cufflinks 9.539     High High
cufflinks 6.352        
cufflinks 0.01     Low Low
cufflinks 11.506     High High
cufflinks 0.006     Low Low

0 Strain